We already tried that. Same thing.
On Fri, Dec 3, 2010 at 5:55 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
> Try it with an 8 angstrom cut off and see if that helps. We are seeing
> issues right now with larger cutoffs.
>
> > -----Original Message-----
> > From: Bill Miller III [mailto:billymiller.ufl.edu]
> > Sent: Friday, December 03, 2010 2:21 PM
> > To: AMBER Developers Mailing List
> > Subject: Re: [AMBER-Developers] pmemd.cuda.MPI error
> >
> > Ross,
> >
> > I just tried running the same system with pmemd.cuda.MPI without
> > restraints,
> > and I got the same behavior. The same error occurred after 15 steps.
> >
> > -Bill
> >
> > On Fri, Dec 3, 2010 at 5:20 PM, Bill Miller III
> <brmilleriii.gmail.com>wrote:
> >
> > > Ross,
> > >
> > > I just tried running the same system with pmemd.cuda.MPI without
> > > restraints, and I got the same behavior. The same error occurred after
> 15
> > > steps.
> > >
> > > -Bill
> > >
> > >
> > > On Fri, Dec 3, 2010 at 5:17 PM, Jason Swails
> > <jason.swails.gmail.com>wrote:
> > >
> > >> On Fri, Dec 3, 2010 at 5:10 PM, Ross Walker <ross.rosswalker.co.uk>
> > >> wrote:
> > >>
> > >> > Hi Bill,
> > >> >
> > >> > > I have recently been running MD with a recently checked out
> version
> > of
> > >> > > Amber
> > >> >
> > >> > Can you confirm what you mean by 'recent'? This problem may have
> > been
> > >> fixed
> > >> > with bugfix.11. Can you also try running without the restraints and
> see
> > >> if
> > >> >
> > >>
> > >> It's my build on lincoln. The last git commit id was 55886d20e, on
> Mon.,
> > >> 11/29. I don't think I've seen any cuda traffic on the CVS mailing
> list
> > >> since then.
> > >>
> > >> All the best,
> > >> Jason
> > >>
> > >>
> > >> > the problem still occurs.
> > >> >
> > >> > All the best
> > >> > Ross
> > >> >
> > >> > /\
> > >> > \/
> > >> > |\oss Walker
> > >> >
> > >> > ---------------------------------------------------------
> > >> > | Assistant Research Professor |
> > >> > | San Diego Supercomputer Center |
> > >> > | Adjunct Assistant Professor |
> > >> > | Dept. of Chemistry and Biochemistry |
> > >> > | University of California San Diego |
> > >> > | NVIDIA Fellow |
> > >> > | http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
> > >> > | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> > >> > ---------------------------------------------------------
> > >> >
> > >> > Note: Electronic Mail is not secure, has no guarantee of delivery,
> may
> > >> not
> > >> > be read every day, and should not be used for urgent or sensitive
> > >> issues.
> > >> >
> > >> >
> > >> >
> > >> >
> > >> >
> > >> > _______________________________________________
> > >> > AMBER-Developers mailing list
> > >> > AMBER-Developers.ambermd.org
> > >> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> > >> >
> > >>
> > >>
> > >>
> > >> --
> > >> Jason M. Swails
> > >> Quantum Theory Project,
> > >> University of Florida
> > >> Ph.D. Graduate Student
> > >> 352-392-4032
> > >> _______________________________________________
> > >> AMBER-Developers mailing list
> > >> AMBER-Developers.ambermd.org
> > >> http://lists.ambermd.org/mailman/listinfo/amber-developers
> > >>
> > >
> > >
> > >
> > > --
> > > Bill Miller III
> > >
> > > Quantum Theory Project,
> > > University of Florida
> > > Ph.D. Graduate Student
> > > 352-392-6715
> > >
> >
> >
> >
> > --
> > Bill Miller III
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Graduate Student
> > 352-392-6715
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri Dec 03 2010 - 15:00:04 PST
