Re: [AMBER-Developers] AmberTools configure failure and compilation errors

From: Sally Pias <sallypias.gmail.com>
Date: Sun, 11 Apr 2010 09:36:06 -0600

> ==========
>> A serial compilation error with GNU compilers on the same system
>> (using ./configure -static -noX11 gnu):
>
>> _safemem.f: In function 'reallocate_pointer_1d_character':
>> _safemem.f:914: internal compiler error: Segmentation fault
>
> Looks like this is gcc 4.1.x.  What is the value of "x", and which Linux?
$ gcc -v
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v
--enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr
--enable-shared --with-system-zlib --libexecdir=/usr/lib
--without-included-gettext --enable-threads=posix --enable-nls
--program-suffix=-4.1 --enable-__cxa_atexit --enable-clocale=gnu
--enable-libstdcxx-debug --enable-mpfr --enable-checking=release
x86_64-linux-gnu
Thread model: posix
gcc version 4.1.2 20061115 (prerelease) (Debian 4.1.1-21)
$ uname -a
Linux computername 2.6.18-6-amd64 #1 SMP Mon Jun 16 22:30:01 UTC 2008
x86_64 GNU/Linux

> There are lots of problems with 4.1.2 (still widely distributed, thanks
> to RedHat,Fedora,CentOS) but we haven't seen a compilation failure before.

>>==========
>> A similar serial compilation error with GNU compilers on a different
>> system (using ./configure -static -noX11 gnu):
>
> ????  Looks like the same compiler error.
Yes.

$ gcc -v
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v
--enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr
--enable-shared --with-system-zlib --libexecdir=/usr/lib
--without-included-gettext --enable-threads=posix --enable-nls
--program-suffix=-4.1 --enable-__cxa_atexit --enable-clocale=gnu
--enable-libstdcxx-debug --enable-mpfr --with-tune=i686
--enable-checking=release i486-linux-gnu
Thread model: posix
gcc version 4.1.2 20061115 (prerelease) (Debian 4.1.1-21)
$ uname -a
Linux computername2 2.6.18-6-686 #1 SMP Mon Aug 18 08:42:39 UTC 2008
i686 GNU/Linux

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Received on Sun Apr 11 2010 - 09:00:03 PDT
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