On Fri, Apr 2, 2010 at 5:14 PM, Jason Swails <jason.swails.gmail.com> wrote:
> Hello,
>
> I get the following error message compiling pmemd.cuda on my machine
> (GNU 4.4.1 compilers, Ubuntu 9.10, CUDA 3 release).
Lesson learned ---> google first. It's a problem with GNU 4.4
compilers i'm led to believe (CUDA issue, not Amber). I'll try again
after I install older compilers.
Thanks!
Jason
>
> gcc -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DCUDA -I/usr/local/cuda/include -c gpu.cpp
> gcc -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DCUDA -I/usr/local/cuda/include -c gputypes.cpp
> /usr/local/cuda/bin/nvcc -use_fast_math -O3 -gencode
> arch=compute_13,code=sm_13 -gencode arch=compute_20,code=sm_20 -DCUDA
> -I/usr/local/cuda/include -c kForcesUpdate.cu
> /usr/include/string.h:43: error: inline function ‘void* memcpy(void*,
> const void*, size_t)’ cannot be declared weak
> /usr/include/string.h:64: error: inline function ‘void* memset(void*,
> int, size_t)’ cannot be declared weak
> /usr/include/bits/string3.h:49: error: inline function ‘void*
> memcpy(void*, const void*, size_t)’ cannot be declared weak
> /usr/include/bits/string3.h:78: error: inline function ‘void*
> memset(void*, int, size_t)’ cannot be declared weak
> /usr/local/cuda/bin/../include/common_functions.h:59: error: inline
> function ‘void* memset(void*, int, size_t)’ cannot be declared weak
> /usr/local/cuda/bin/../include/common_functions.h:62: error: inline
> function ‘void* memcpy(void*, const void*, size_t)’ cannot be declared
> weak
> /usr/local/cuda/bin/../include/math_functions.h:422: error: inline
> function ‘int __signbit(double)’ cannot be declared weak
> /usr/local/cuda/bin/../include/math_functions.h:427: error: inline
> function ‘int __signbitf(float)’ cannot be declared weak
> /usr/local/cuda/bin/../include/math_functions.h:440: error: inline
> function ‘int __signbitl(long double)’ cannot be declared weak
> /usr/include/bits/mathcalls.h:350: error: inline function ‘int
> __signbit(double)’ cannot be declared weak
> /usr/include/bits/mathcalls.h:350: error: inline function ‘int
> __signbitf(float)’ cannot be declared weak
> /usr/include/bits/mathcalls.h:350: error: inline function ‘int
> __signbitl(long double)’ cannot be declared weak
> /usr/include/bits/mathinline.h:36: error: inline function ‘int
> __signbitf(float)’ cannot be declared weak
> /usr/include/bits/mathinline.h:42: error: inline function ‘int
> __signbit(double)’ cannot be declared weak
> /usr/include/bits/mathinline.h:48: error: inline function ‘int
> __signbitl(long double)’ cannot be declared weak
> make[3]: *** [kForcesUpdate.o] Error 1
> make[3]: Leaving directory
> `/home/swails/newamber/04.01.10/amber11/src/pmemd/src/cuda'
> make[2]: *** [-L/usr/local/cuda/lib64] Error 2
> make[2]: Leaving directory
> `/home/swails/newamber/04.01.10/amber11/src/pmemd/src'
> make[1]: *** [cuda] Error 2
> make[1]: Leaving directory `/home/swails/newamber/04.01.10/amber11/src/pmemd'
> make: *** [cuda] Error 2
>
>
> Any ideas?
>
> Thanks!
> Jason
>
> --
> ---------------------------------------
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
>
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri Apr 02 2010 - 14:30:05 PDT
