On Thu, Apr 1, 2010 at 2:15 PM, case <case.biomaps.rutgers.edu> wrote:
> On Thu, Apr 01, 2010, Jason Swails wrote:
>>
>> I figured I'd report this here, since it's an issue with compilation...
>>
>> Linux x86_64; ifort/icc 10.1.015; MKL 10.0.2.018
>>
>> Compilation error with AmberTools (fails in fftw-2)
>>
>> if [ "/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib/libfftw2xf_intel.a"
>> = '/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib/libfftw2xf_intel.a'
>> ]; then\
>> cd /opt/intel/mkl/10.0.2.018/interfaces/fftw2xf && make libem64t \
>> compiler=intel PRECISION=MKL_DOUBLE \
>> INSTALL_DIR=/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib; \
>> else \
>> cd ../fftw-2.1.5 && make install; \
>> fi
>> make[2]: Entering directory `/opt/intel/mkl/10.0.2.018/interfaces/fftw2xf'
>> make clean ../../lib/em64t/libfftw2xf_intel.a _IA=em64t
>> make[3]: Entering directory `/opt/intel/mkl/10.0.2.018/interfaces/fftw2xf'
>> rm -f ../../lib/em64t/libfftw2xf_intel.a *.o
>> rm: cannot remove `../../lib/em64t/libfftw2xf_intel.a': Permission denied
>
> We had similar issues before, but that was because AMBERHOME was not set
> correctly. I don't think that is the case here.
>
> Can you go to /opt/intel/mkl/10.0.2.018/lib/em64t, and see if there
> is a libfftw2xf_intel.a file there? Does it have a date stamp (or owner)
> that suggests it was supplied by intel and the time of installation?
-rw-r--r-- 1 root root 130K Mar 25 2009 libfftw2xf_intel.a
>
> It's always seemed really weird that users would be asked to go to their
> MKL_HOME directory (where almost no one will have write permissions) to make
> something; I don't know if this is a MKL version issue or not.
Certainly strange...
Thanks!
Jason
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Thu Apr 01 2010 - 11:30:08 PDT
