Re: [AMBER-Developers] parallel compile error

From: Jason Swails <>
Date: Fri, 26 Mar 2010 10:57:40 -0700

On Fri, Mar 26, 2010 at 10:40 AM, InSuk Joung <> wrote:
> make[2]: Entering directory `/home/isjoung/AMBER/amber11/src/semantics'
> ./parse *.rules
> ./parse: error while loading shared libraries: cannot open
> shared object file: No such file or directory
> make[2]: *** [checkexpr.c] error 127
> make[2]: Leaving directory `/home/isjoung/AMBER/amber11/src/semantics'
> make[1]: *** [checkexpr.c] error 2
> make[1]: Leaving directory `/home/isjoung/AMBER/amber11/src/nab'
> make: *** [parallel] error 2
> There is '' in $AMBERHOME/lib.  But 'parse' doesn't seem to
> search through the directory.
> After I put it in $LD_LIBRARY_PATH, 'parse' stopped complaining about this.

In my experience, $MPI_HOME/lib has always had to be in my
LD_LIBRARY_PATH for MPI executables to run successfully. Perhaps we
should add those directions to the end of the openmpi/lam install
included with Amber (since it compiles the MPI to $AMBERHOME)? Am I
mistaken about this?


All the best,
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
AMBER-Developers mailing list
Received on Fri Mar 26 2010 - 11:00:04 PDT
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