Addendum: this currently only seems to be a problem with the intel
compilers. My gnu/cygwin compilation still works.
On Thu, Mar 4, 2010 at 8:17 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> This seems to be happening because icc can't find the fortran routines it
> needs. Adding a -L flag with the directory to your fortran library
> directory, something like e.g.
>
> icc -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o
> trajectory.o netcdf_ptraj.o parallel_ptraj.al.o ptraj.o actions.o analyze.o
> thermo.o pubfft.o cluster.o clusterLib.o* -L/opt/intel/fce/10.1.015/lib*...
>
> before all of the libraries seems to do the trick. I'm not sure what the
> best way to correct this in the Makefile/configure script is.
>
> -Dan
>
>
> On Thu, Mar 4, 2010 at 6:04 AM, Mark Williamson <mjw.sdsc.edu> wrote:
>
>> Fresh checkout of the amber11 cvs tree as of Thu Mar 4 02:57:47 PST 2010
>>
>>
>> ifort 10.1.018
>> RHEL4.8 X86_64
>>
>> ./configure intel ; make -f Makefile_at
>> <...snip....>
>>
>> icc -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o
>> trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o
>> display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o
>> thermo.o pubfft.o cluster.o clusterLib.o
>> /server-home/mjw/code/AMBER/amber11/lib/libpdb.a
>> /server-home/mjw/code/AMBER/amber11/lib/arpack.a
>> /server-home/mjw/code/AMBER/amber11/lib/lapack.a
>> /server-home/mjw/code/AMBER/amber11/lib/blas.a -lifport -lifcore -lsvml
>> ../netcdf/lib/libnetcdf.a -lm
>> thermo.o(.text+0x475): In function `thermo_':
>> : undefined reference to `for_write_seq_fmt'
>> thermo.o(.text+0x4c0): In function `thermo_':
>>
>> <....etc....>
>>
>> /server-home/mjw/code/AMBER/amber11/lib/blas.a(xerbla.o)(.text+0x75): In
>> function `xerbla_':
>> : undefined reference to `for_stop_core'
>> make[1]: *** [rdparm] Error 1
>> make[1]: Leaving directory `/server-home/mjw/code/AMBER/amber11/src/ptraj'
>> make: *** [serial] Error 2
>>
>> Any ideas?
>>
>> Mark
>>
>>
>> _______________________________________________
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>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>
>
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Received on Thu Mar 04 2010 - 05:30:05 PST
