Re: [AMBER-Developers] Error compiling under cygwin

From: case <case.biomaps.rutgers.edu>
Date: Sat, 27 Feb 2010 10:42:51 -0500

On Sat, Feb 27, 2010, Daniel Roe wrote:
>
> Compilers: gcc (GCC) 4.3.4 20090804 (release) 1, GNU Fortran (GCC) 4.3.4
> 20090804 (release) 1
> System: CYGWIN_NT-5.1 mojyt 1.7.1(0.218/5/3) 2009-12-07 11:48 i686 Cygwin
> CVS Checkout Time: 2010-02-26 13:36

Good: you can be our cygwin person.

> Configure command: ./configure -cygwin -noX11 -nosleap gnu

Do xleap and sleap not work??


> /home/Dan/Amber/CVS/amber11/lib/libmc.a(cmplx.o):cmplx.c:(.text+0x592):
> multiple definition of `_csqrt'

You need to prevent cygwin compiling libmc.a. Go to line 669 of configure
and have all platforms set c9xcomplex='skip'; i.e. comment out the "else"
block there. That may break Langevin modes, however, but it's worth a try.

...dac

p.s.: any grapevine news on NEB integration into Amber11?


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Received on Sat Feb 27 2010 - 08:00:04 PST
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