Re: [AMBER-Developers] Re: [AMBER] ptraj, imaging for NAMD generated dcd files, Error in tokenize

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Thu, 25 Feb 2010 08:30:02 -0500

Should be fixed now. For some reason in the transformImage command the
keywords looked for were byre, bymo, and byat instead of byres, bymol, and
byatom. I updated the keywords, should be fine and consistent with
documentation now.

On Thu, Feb 25, 2010 at 8:14 AM, case <case.biomaps.rutgers.edu> wrote:

> On Thu, Feb 25, 2010, Monika Sharma wrote:
>
> > Hey thanks.. It worked.. :) That was weird.. Now I have to look into code
> > too. Thank you a lot..
> >
> > On Thu, Feb 25, 2010 at 6:25 PM, Hannes Loeffler <
> Hannes.Loeffler.stfc.ac.uk
> > > wrote:
> >
> > > On Thu, 25 Feb 2010 17:54:20 +0530
> > > Monika Sharma <mondyn.gmail.com> wrote:
> > >
> > > > image origin center byres ":821,200-231" familiar com :2-173
> > >
> > > Try with 'byre' instead of 'byres'. (I know the manual says otherwise
> > > but this is what the source code says.)
>
> This looks like a bug in the argumentStackContains() function, which is in
> actions.c. Workaround for this particular case would be to update lines
> 11199-11205; but the function doesn't seem to be doing what its comments
> say it should(?).
>
> Anyone (Dan?) have time to take a look at this? Tom: you could too, but
> I'd rather you put effort into updating the ptraj section of the manual....
>
> ...thx...dac
>
>
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>



-- 
-Dan
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