[AMBER-Developers] Re: [AMBER] ptraj, imaging for NAMD generated dcd files, Error in tokenize

From: case <case.biomaps.rutgers.edu>
Date: Thu, 25 Feb 2010 08:14:13 -0500

On Thu, Feb 25, 2010, Monika Sharma wrote:

> Hey thanks.. It worked.. :) That was weird.. Now I have to look into code
> too. Thank you a lot..
>
> On Thu, Feb 25, 2010 at 6:25 PM, Hannes Loeffler <Hannes.Loeffler.stfc.ac.uk
> > wrote:
>
> > On Thu, 25 Feb 2010 17:54:20 +0530
> > Monika Sharma <mondyn.gmail.com> wrote:
> >
> > > image origin center byres ":821,200-231" familiar com :2-173
> >
> > Try with 'byre' instead of 'byres'. (I know the manual says otherwise
> > but this is what the source code says.)

This looks like a bug in the argumentStackContains() function, which is in
actions.c. Workaround for this particular case would be to update lines
11199-11205; but the function doesn't seem to be doing what its comments
say it should(?).

Anyone (Dan?) have time to take a look at this? Tom: you could too, but
I'd rather you put effort into updating the ptraj section of the manual....

...thx...dac


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Received on Thu Feb 25 2010 - 05:30:03 PST
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