Regarding compiling with ia64:
The netcdf/DBINTRAJ thing seems to function well (skips netcdf, doesn't add DBINTRAJ).
I still have to delete some compiler options. Here are the error messages. I get similar messages when it calls gfortran:
make[1]: Entering directory `/usr/local/programs/amber/amber11_AT_20091214/src/carpack'
gcc -c -O3 -mtune=generic -msse -mfpmath=sse -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o dgetv0.o dgetv0.c
cc1: error: bad value ‘generic’ for -mtune= switch
cc1: error: unrecognized command line option "-msse"
cc1: error: unrecognized command line option "-mfpmath=sse"
make[1]: *** [dgetv0.o] Error 1
make[1]: Leaving directory `/usr/local/programs/amber/amber11_AT_20091214/src/carpack'
make: *** [serial] Error 2
As noted in an earlier email somewhere, my response to this is to remove compiler options until it stops complaining. I realize this might degrade performance, but decreased performance is better than not compiling. I'm compiling it now without the options. Usually, it works.
Other info I suspect you might want (more upon request):
gcc (GCC) 4.3.1
GNU Fortran (GCC) 4.3.1
Linux glycam.ccrc.uga.edu 2.6.9-42.0.3.EL #1 SMP Mon Sep 25 17:14:34 EDT 2006 ia64 ia64 ia64 GNU/Linux
Red Hat Enterprise Linux AS release 4 (Nahant Update 4)
I am not an expert on compiler options, but will do my best if you have questions since I happen to have an ia64 to play with.
:-) Lachele
--
B. Lachele Foley, PhD '92,'02
Assistant Research Scientist
Complex Carbohydrate Research Center, UGA
706-542-0263
lfoley.ccrc.uga.edu
----- Original Message -----
From: case
[mailto:case.biomaps.rutgers.edu]
To: amber-developers.ambermd.org
Sent:
Sun, 13 Dec 2009 21:11:37 -0500
Subject: [AMBER-Developers] getting close
for AmberTools 1.3
> Hi everyone:
>
> Another release candidate has been uploaded:
>
> http://ambermd.org/downloads/AmberTools.13dec09.tar.bz2
>
> This has updates to the docs from Lachele (who should proofread), plus
> configure tweaks and so on.
>
> If someone can test parallel ptraj, I would appreciate it. Maybe also ia64.
>
> Known problem: sleap is not working under cygwin, but I'm willing to release
> without solving this. [sleap.exe just returns, never giving a user prompt
> or reading any input files.]
>
> I'm hoping to make the release by the end of the week.
>
> Thanks to all of you who have been working hard on this.
>
> ...dac
>
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
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Received on Mon Dec 14 2009 - 12:00:02 PST
