Re: [AMBER-Developers] test request for ambertools and Snow Leopard 64 bits kernel

From: Ben Roberts <roberts.qtp.ufl.edu>
Date: Wed, 25 Nov 2009 17:13:28 -0500

On Wed, 2009-11-25 at 17:06 -0500, Scott Brozell wrote:
> Hi,
>
> On Wed, Nov 25, 2009 at 04:59:37PM -0500, Ben Roberts wrote:
> > All:
> >
> > It seems that something is going very wrong inside bondtype.c on
> > chemokine.
> >
> > In my case, the fatal error is triggered because there exists a bond for
> > which jflag is set to 1 on Snow Leopard, compared to -1 for Linux. This
> > causes the code to travel down a different path, where it checks for the
> > frozen atom type, discovers that it's 0, and exits (relatively)
> > gracefully.
> >
> > However, that's not the only discrepancy between Linux and Snow Leopard.
> > Many of the entries for parts of BOND data structures (type, type2,
> > jflag, etc.) are different. Sometimes, on Linux, the type entry for a
> > certain bond will contain a large negative number (in the millions or
> > higher), while on Snow Leopard the type entry for the same bond will be
> > 0. Other times the difference is more subtle (e.g., -2 instead of 0, or
> > the flag case above).
> >
> > I have put a bunch of files up on a web server, rather than trying to
>
> Thanks for your work.
> Whats the web server address ?
>

Trust me to forget that detail. Sorry.

http://www.qtp.ufl.edu/~roberts


B



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Received on Wed Nov 25 2009 - 14:30:05 PST
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