RE: [AMBER-Developers] Compiling problem with a fresh checkout

From: Wu, Xiongwu (NIH/NHLBI) [E] <"Wu,>
Date: Thu, 22 Oct 2009 09:53:53 -0400

Hi Ben,

Thanks for helping. I am using lam-7.1.3 coming with AMBER11:

At lam-7.1.3:
./configure --prefix=$(AMBERHOME)
make install

Then at $(AMBERHOME)/src
./configure gnu
make -f Makefile_at clean
make -f Makefile_at
make clean
make serial
./configure -mpi gnu

make -f Makefile_at clean
make -f Makefile_at parallel
make clean
make parallel

(error messages)

Fortran 90 feature at (^) unsupported
   end module constants
Invalid form for END statement at (^)
   double precision, parameter :: TEN_TO_MINUS2 = 1.0d-2
End of source file before end of block started at (^)
mpif77: No such file or directory
make[1]: *** [constants.o] Error 1
make[1]: Leaving directory `/v/bigbox6/home/wxw/ambers/amber11/src/sander'
make: *** [parallel] Error 2

I hope you can give me a hint how to solve this problem. I have done 'cvs update'



From: Ben Roberts []
Sent: Thursday, October 22, 2009 9:08 AM
To: AMBER Developers Mailing List
Subject: Re: [AMBER-Developers] Compiling problem with a fresh checkout

Hi Xiongwu,

(Dave, I hope it's OK if I interrupt here.)

Can you tell me how exactly you can't compile the parallel version? Is
it something to do with "libnetcdf.a not found"?

The reason I ask is that I ran into that problem yesterday, and am
working on a solution for it.

If it's something else, then others (like Dave) are almost certainly
better placed to help you. Over to you...


Wu, Xiongwu (NIH/NHLBI) [E] wrote:
> Dear Dave,
> Thanks for reverting the configure. I did "cvs update" and can
> compile the serial version now. but not the parallel version.
> I am using Linux centos 5, here are the output:
> m1 503: gcc --version gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)
> Copyright (C) 2006 Free Software Foundation, Inc. This is free
> software; see the source for copying conditions. There is NO
> m1 504: gfortran --version GNU Fortran (GCC) 4.1.2 20080704 (Red Hat
> 4.1.2-44) Copyright (C) 2007 Free Software Foundation, Inc.
> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
> You may redistribute copies of GNU Fortran under the terms of the GNU
> General Public License. For more information about these matters, see
> the file named COPYING
> Thanks!
> Xiongwu

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