Dear Dave,
Thanks for reverting the configure. I did "cvs update" and can compile the serial version now. but not the parallel version.
I am using Linux centos 5, here are the output:
m1 503: gcc --version
gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
m1 504: gfortran --version
GNU Fortran (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)
Copyright (C) 2007 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
Thanks!
Xiongwu
________________________________________
From: case [case.biomaps.rutgers.edu]
Sent: Wednesday, October 21, 2009 4:21 PM
To: AMBER Developers Mailing List
Subject: Re: [AMBER-Developers] Compiling problem with a fresh checkout
On Wed, Oct 21, 2009, Wu, Xiongwu (NIH/NHLBI) [E] wrote:
> I just checkout a fresh copy of AMBER11 but see the following error when compiling it.
>
> ../netcdf/lib/libnetcdf.a(netcdf.o): In function `__netcdf__nf90_rename_var':
> /v/bigbox6/home/wxw/ambers/amber11/src/netcdf/src/f90/netcdf_variables.f90:86: undefined reference to `nf_rename_var_'
> collect2: ld returned 1 exit status
> make[1]: *** [sander] Error 1
> make[1]: Leaving directory `/v/bigbox6/home/wxw/ambers/amber11/src/sander'
> make: *** [serial] Error 2
Something is wrong with version 1.30 of configure; I have reverted CVS to
version 1.29 until we sort this out. So, a "cvs update", followed by a
reconfigure, should help Xiongwu.
Xiongwu: what OS are you on? What do gcc --version and gfortran --version
report?
...thx...dac
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Received on Wed Oct 21 2009 - 19:00:02 PDT
