Hi
> Why not run the configure_openmpi script in amber11/src? This is what we
> want people to do. Note that it specifies compilers, and other flags that
ok, I didnt see that until after I built my own openmpi. Configuring with
the provided script works as well.
> Did you use the configure_lam script in amber11/src? This worked for me
> with intel compilers. Again, using the script ensures that the proper
Trying LAM again, this time with the configure_lam script in Amber11/src
doesnt resolve my problem. The script as I checked it out uses GNU
compilers by default. Setting FC, CC and CXX to the intel ones again fails
during the parallel netcdf configure step:
>From pnetcdf/config.log
[...]
configure:12680: mpicc -o conftest -DBINTRAJ -DNDEBUG conftest.c
-lhpmpio >&5
ld: cannot find -lhpmpio
[...]
configure:12721: error: Cannot find MPI-IO library
[...]
this library indeed is not built during the LAM-config. Switching back to
openmpi, hpmpio still doesnt exist, but netcdf configures fine.
Are there any additional flags I should set for the lam-configure? Since
my build with openmpi works, I can go ahead. Since LAM/Intel works for
you, maybe the problem are specific to my system. Still, I'll see if I can
get it to work for me...
Regards,
Thomas
Dr. Thomas Steinbrecher
BioMaps Institute
Rutgers University
610 Taylor Rd.
Piscataway, NJ 08854
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Received on Fri Sep 18 2009 - 02:30:06 PDT
