Re: amber-developers: nmode units

From: David A. Case <case.biomaps.rutgers.edu>
Date: Fri, 12 Dec 2008 06:56:41 -0500

On Thu, Dec 11, 2008, Ilyas Yildirim wrote:
>
> "the si system of units is used internally. conversion to units more
> familiar to most chemists is made for output."

"more familiar to most chemists" means cal/mol-deg for entropy.
Furthermore, the output is very clear (unusual for Amber!), with lines like
this:

           freq. E Cv S
          cm**-1 kcal/mol cal/mol-kelvin cal/mol-kelvin
--------------------------------------------------------------------------------
 Total 45.379 32.658 99.218
 translational 0.888 2.979 40.781
 rotational 0.888 2.979 29.811
 vibrational 43.603 26.700 28.627

...dac
Received on Sun Dec 14 2008 - 01:08:33 PST
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