Hi,
For Bug 72, the database test passed on my mac machine:
Darwin igoo.local 8.11.1 Darwin Kernel Version 8.11.1: Wed Oct 10 18:23:28 PDT 2007; root:xnu-792.25.20~1/RELEASE_I386 i386 i386
Is this bug caused by different total.prepi.save file in amber11/test/antechamber/database and AmberTools.25jun08.tar.bz2?
Best
Junmei
----- Original Message ----
From: Scott Brozell <sbrozell.scripps.edu>
To: amber-developers.scripps.edu
Cc: David A. Case <case.scripps.edu>; Tom Macke <macke.scripps.edu>; Russ.Brown.sun.com; svrci.tbi.univie.ac.at; istvan.kolossvary.hu; Yannick_Bomble.nrel.gov
Sent: Monday, June 30, 2008 4:42:31 PM
Subject: Re: amber-developers: second draft release for AmberTools1.1
Hi,
On Fri, 27 Jun 2008, Scott Brozell wrote:
> On Wed, 25 Jun 2008, David A. Case wrote:
>
> > We have an second candidate release tarball:
> >
> > loyd.scripps.edu:/thr/loyd/case/AmberTools.25jun08.tar.bz2
> >
> > This has all contributions up to yesterday (24 jun). Please grab a copy and
> > try it out on your machine. I would appreciate it if people could post
> > results to the amber-developers list -- let us know what cpu/os/compiler
> > you tried, and what happened on compilation and testing. I have grants to
> > write, and only a few machines around anyway, so I would really appreciate
> > tests, especially on Sun, IBM, MacOS, SGI [i.e. weird systems :-) ]
>
> I tested on a macos and an opteron.
> The mac has test issues with awk that may be operator error
> and some antechamber sig fig differences.
> I wont get back to this until late tomw.
> platform details below,
Done - the only remaining sig diff is
./antechamber/database/total.prepi.dif
284d283
< C7 C6
which is bug 72
Scott
>
> > Also, if you have a chance, please look for missing or broken items in the
> > dat directory (and elsewhere). One of the glitches in version 1.0 was that
> > we were missing some library files, but that didn't show up in the tests.
> > So, poke around in various places, and let us know if something looks amiss.
>
>
> Darwin rooster.compbio.ucsf.edu 7.9.0 Darwin Kernel Version 7.9.0: Wed Mar 30 20:11:17 PST 2005; root:xnu/xnu-517.12.7.obj~1/RELEASE_PPC Power Macintosh powerpc
> Reading specs from /usr/libexec/gcc/darwin/ppc/3.3/specs
> Thread model: posix
> gcc version 3.3 20030304 (Apple Computer, Inc. build 1495)
>
>
> model name : Dual-Core AMD Opteron(tm) Processor 8218
> Linux opt-login01.osc.edu 2.6.18-92.el5 #1 SMP Tue Apr 29 13:16:15 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux
> Using built-in specs.
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.1.2 20071124 (Red Hat 4.1.2-42)
>
Received on Wed Jul 02 2008 - 06:07:46 PDT
