On Wed, Oct 24, 2007, Mengjuei Hsieh wrote:
>
> It seem that the current makefile for src/gleap needs some revisions,
> first of all, it includes ../config.h, which should be ../
> config_amber.h now.
This is not the correct solution, although I would understand that it's not
obvious to anyone but me... :-)
You need to run amber10/src/configure_at first (which creates
amber10/src/config.h), then the Makefile should work.
sleap/gleap are now part of amber_tools, and (currently) are configured via
"configure_at" and are compiled via amber10/src/Makefile_at. Please see
amber10/README_at for more info.
Sometime soon, the "configure" and "configure_at" scripts will be merged (we
hope!) into a single unified script. Until then, see if the info in README_at
helps.
>
> Also the make clean rule for src/gleap doesn't remove *.a files.
I'll take a look at this.
>
> In sleap's own repository of readline, the readline/xmalloc.h is
> trying to include readline/readline/rlstdc.h, which may need to be
> taken care of. In some operating systems, gcc -I. get to read the
> rlstdc.h without problem, but that's not the case in my linux fc6 and
> macosx.
My recommendation is to change amber10/src/gleap/freelib/readline/xmalloc.h
as follows:
c.h 4 May 2007 17:49:11 -0000 1.1
--- xmalloc.h 25 Oct 2007 00:13:35 -0000
***************
*** 23,33 ****
#if !defined (_XMALLOC_H_)
#define _XMALLOC_H_
! #if defined (READLINE_LIBRARY)
! # include "rlstdc.h"
! #else
! # include <readline/rlstdc.h>
! #endif
#ifndef PTR_T
--- 23,29 ----
#if !defined (_XMALLOC_H_)
#define _XMALLOC_H_
! #include "rlstdc.h"
#ifndef PTR_T
Mengjeui: would this change fix things for you?
Wei: is there a reason not to do this?
...thanks for the input....dave
--
==================================================================
David A. Case | e-mail: case.scripps.edu
Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
The Scripps Research Institute | phone: +1-858-784-9768
10550 N. Torrey Pines Rd. | skype: dacase
La Jolla CA 92037 USA | http://www.scripps.edu/case
==================================================================
Received on Sun Oct 28 2007 - 06:07:17 PDT
