After talking to him, the problem seems to be without using the nobox
option ... Thanks a lot!
Ray
Thomas E. Cheatham, III wrote:
>>This is what I did. Read traj file using ptraj. Strip out the atoms I
don't
>>want. Write out a new smaller traj file. The new smaller traj file is
garbage.
>>
>>
>
>It is not clear what "garbage" means. Did the user specify the keyword
>"nobox" on the trajout line to avoid dumping box information or was box
>information wanted? Was the first frame OK and all others corrupted
>(usually due to presence/absence of expected/unexpected box information)?
>
>--tom
>
>
>.
>
>
>
--
====================================================
Ray Luo, Ph.D.
Department of Molecular Biology and Biochemistry
University of California, Irvine, CA 92697-3900
Office: (949)824-9528 Lab: (949)824-9562
Fax: (949)824-8551 e-mail: rluo.uci.edu
Home page: http://rayl0.bio.uci.edu/rayl/
====================================================
Received on Wed Apr 05 2006 - 23:49:40 PDT
