Folks -
Like David says, the amber8/src/pmemd tree is where David has started
working on porting pmemd to the new config scheme. I am going to add
source here, destined for the 8 release, in the next few weeks, and start
trying out the config stuff. If you want to help debug config issues,
please use this. If you want a solid release of pmemd 3.1, known to work
well, get it from the amber web page instead. The amber8/src.pmemd tree
is
an outdated drop point, which I hope can be made to go away. Sorry for
the
confusion. By the way, Tom Cheatham (you out there, Tom?) was going to
give
me access to itaniums/opterons to test pmemd on, and work out config
issues,
but I have not heard back. If anyone else has platforms we need to
support,
but that I currently don't support due to the fact that I don't have
access,
help would be appreciated (either access or testing).
Regards - Bob
----- Original Message -----
From: "David A. Case" <case.scripps.edu>
To: <amber-developers.scripps.edu>
Sent: Wednesday, December 17, 2003 5:37 PM
Subject: Re: amber-developers: pmemd.src vs. src/pmemd
> On Wed, Dec 17, 2003, James W. Caldwell wrote:
> >
> > I'm confused. In the Amber8 tree there are: amber8/src/pmemd
> > and amber8/src.pmemd/pmemd. Which is the real pmemd?
> >
>
> Use amber8/src/pmemd. This uses the same "configure" setup as the rest
> of the suite. The amber/src.pmemd/pmemd is older, and uses the Machine
> file build syntax from amber7.
>
> If you want the "real" pmemd (most reliable) download it as a tar file
> from the Amber web site. But amber8/src/pmemd looks pretty good, and
will
> be the basis for what goes out to users in March.
>
> ..dac
>
> --
>
> ==================================================================
> David A. Case | e-mail: case.scripps.edu
> Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
> The Scripps Research Institute | phone: +1-858-784-9768
> 10550 N. Torrey Pines Rd. | home page:
> La Jolla CA 92037 USA | http://www.scripps.edu/case
> ==================================================================
>
>
Received on Wed Apr 05 2006 - 23:50:05 PDT
