Hi All,
Somewhere between AmberTools 18 and 20, the code in antechamber that quoted executable paths with spaces in them before being sent to a system() call got removed. Consequently, antechamber can't execute its subprograms (e.g. bondtype) in such situations and bombs out (since the system() call interprets the path up to the first space as the "executable"). So antechamber will fail if AmberTools is installed into a folder/directory with a space anywhere in the path leading to it.
I have attached a patch file for AmberTools/src/antechamber/common.c that restores the quote-if-necessary functionality. I hope it can be incorporated, or some other code added that produces the same result.
--Eric
Eric Pettersen
UCSF Computer Graphics Lab
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Received on Tue Jul 13 2021 - 13:30:02 PDT
