Good idea... done... still getting
fatal: no submodule mapping found in .gitmodules for path
'AmberTools/src/build-bot/ambertools-test'
for each of those commands, though...
On Wed, Sep 20, 2017 at 2:55 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> May be try
>
> git submodule foreach git clean -fdx .
> git submodule foreach git checkout .
>
> I will read your email mor carefully tonight.
>
> Hai
>
> On Wed, Sep 20, 2017 at 2:49 PM David Cerutti <dscerutti.gmail.com> wrote:
>
> > 2.9.5...
> >
> > >From the location it looks like some submodule may not be properly
> > addressing everything from the root directory. I was in
> src/pmemd/src/cuda
> > when I did "git submodule update --init," which should be just fine, but
> it
> > said it was searching for something in AmberTools/src/... as if it were a
> > subdirectory of pmemd/src/cuda. I went back up to the root amber
> > directory. Still got the error, albeit now saying
> >
> > fatal: No url found for submodule path
> > 'AmberTools/src/build-bot/ambertools-test' in .gitmodules
> >
> > If my clone is borked, I don't know how best to get the good changes out
> of
> > it and into a pristine clone before pushing.
> >
> > Dave
> >
> >
> > On Wed, Sep 20, 2017 at 2:41 PM, Daniel Roe <daniel.r.roe.gmail.com>
> > wrote:
> >
> > > Not sure why you're getting that error - sounds like your GIT tree may
> > > be borked in some way. What version of GIT are you using?
> > >
> > > -Dan
> > >
> > > On Wed, Sep 20, 2017 at 2:32 PM, David Cerutti <dscerutti.gmail.com>
> > > wrote:
> > > > I had been doing "git submodule update --remote --merge," but I tried
> > > > submodule update --init again, and I'm getting
> > > >
> > > > fatal: No url found for submodule path
> > > > 'src/pmemd/src/cuda/AmberTools/src/build-bot/ambertools-test' in
> > > .gitmodules
> > > >
> > > >
> > > > On Wed, Sep 20, 2017 at 2:29 PM, Daniel Roe <daniel.r.roe.gmail.com>
> > > wrote:
> > > >
> > > >> Make sure your submodules are up to date:
> > > >>
> > > >> git submodule update --init
> > > >>
> > > >> With some versions of git this is needed to bring them in line.
> > > >>
> > > >> -Dan
> > > >>
> > > >> On Wed, Sep 20, 2017 at 2:22 PM, David Cerutti <dscerutti.gmail.com
> >
> > > >> wrote:
> > > >> > I'm hoping someone can help me to understand what's going on with
> my
> > > >> merges
> > > >> > from SpeedBoostSM into master. I'm preparing to commit my
> > performance
> > > >> > enhancements, and the merge goes more or less smoothly except
> that,
> > > >> after I
> > > >> > merge from commit d3db6730442cee05bc7c048b0bb89213d9a6000f of
> > > >> SpeedBoostSM
> > > >> > (the point at which I deemed things in a suitable state--I've made
> > > other
> > > >> > commits since then to continue progress), I am still getting the
> > > >> following:
> > > >> >
> > > >> > On branch master
> > > >> > Your branch is ahead of 'origin/master' by 59 commits.
> > > >> > (use "git push" to publish your local commits)
> > > >> > Changes not staged for commit:
> > > >> > (use "git add <file>..." to update what will be committed)
> > > >> > (use "git checkout -- <file>..." to discard changes in working
> > > >> directory)
> > > >> > modified: ../../../../AmberTools/src/
> > > ambertools-binary-build
> > > >> (new
> > > >> > commits)
> > > >> > modified: ../../../../AmberTools/src/cpptraj (new
> commits)
> > > >> >
> > > >> > Untracked files:
> > > >> > ...
> > > >> >
> > > >> > It's the business of ambertools-binary-build bearing "changes"
> > (which,
> > > >> for
> > > >> > all I can tell with git diff, are perhaps one whitespace
> > > character)--same
> > > >> > with the cpptraj directory. When I checkout these files /
> > directories
> > > >> from
> > > >> > master I still see "Changes not staged for commit."
> > > >> >
> > > >> > Hai pointed out a similar issue in one of my previous commits
> > > involving
> > > >> the
> > > >> > test cases. I'm not sure what it is, but something seems to be
> > > >> > persistently lacing these files with some miniscule tweak that I
> > can't
> > > >> help
> > > >> > but make--I'm not doing anything to these files deliberately. Can
> > > anyone
> > > >> > suggest what might be going on?
> > > >> >
> > > >> > Cheers,
> > > >> >
> > > >> > Dave
> > > >> > _______________________________________________
> > > >> > AMBER-Developers mailing list
> > > >> > AMBER-Developers.ambermd.org
> > > >> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> > > >>
> > > >>
> > > >>
> > > >> --
> > > >> -------------------------
> > > >> Daniel R. Roe
> > > >> Laboratory of Computational Biology
> > > >> National Institutes of Health, NHLBI
> > > >> 5635 Fishers Ln, Rm T900
> > > >> Rockville MD, 20852
> > > >> https://www.lobos.nih.gov/lcb
> > > >>
> > > >> _______________________________________________
> > > >> AMBER-Developers mailing list
> > > >> AMBER-Developers.ambermd.org
> > > >> http://lists.ambermd.org/mailman/listinfo/amber-developers
> > > >>
> > > > _______________________________________________
> > > > AMBER-Developers mailing list
> > > > AMBER-Developers.ambermd.org
> > > > http://lists.ambermd.org/mailman/listinfo/amber-developers
> > >
> > >
> > >
> > > --
> > > -------------------------
> > > Daniel R. Roe
> > > Laboratory of Computational Biology
> > > National Institutes of Health, NHLBI
> > > 5635 Fishers Ln, Rm T900
> > > Rockville MD, 20852
> > > https://www.lobos.nih.gov/lcb
> > >
> > > _______________________________________________
> > > AMBER-Developers mailing list
> > > AMBER-Developers.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber-developers
> > >
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> >
> _______________________________________________
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Received on Wed Sep 20 2017 - 12:00:06 PDT
