2.9.5...
>From the location it looks like some submodule may not be properly
addressing everything from the root directory. I was in src/pmemd/src/cuda
when I did "git submodule update --init," which should be just fine, but it
said it was searching for something in AmberTools/src/... as if it were a
subdirectory of pmemd/src/cuda. I went back up to the root amber
directory. Still got the error, albeit now saying
fatal: No url found for submodule path
'AmberTools/src/build-bot/ambertools-test' in .gitmodules
If my clone is borked, I don't know how best to get the good changes out of
it and into a pristine clone before pushing.
Dave
On Wed, Sep 20, 2017 at 2:41 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Not sure why you're getting that error - sounds like your GIT tree may
> be borked in some way. What version of GIT are you using?
>
> -Dan
>
> On Wed, Sep 20, 2017 at 2:32 PM, David Cerutti <dscerutti.gmail.com>
> wrote:
> > I had been doing "git submodule update --remote --merge," but I tried
> > submodule update --init again, and I'm getting
> >
> > fatal: No url found for submodule path
> > 'src/pmemd/src/cuda/AmberTools/src/build-bot/ambertools-test' in
> .gitmodules
> >
> >
> > On Wed, Sep 20, 2017 at 2:29 PM, Daniel Roe <daniel.r.roe.gmail.com>
> wrote:
> >
> >> Make sure your submodules are up to date:
> >>
> >> git submodule update --init
> >>
> >> With some versions of git this is needed to bring them in line.
> >>
> >> -Dan
> >>
> >> On Wed, Sep 20, 2017 at 2:22 PM, David Cerutti <dscerutti.gmail.com>
> >> wrote:
> >> > I'm hoping someone can help me to understand what's going on with my
> >> merges
> >> > from SpeedBoostSM into master. I'm preparing to commit my performance
> >> > enhancements, and the merge goes more or less smoothly except that,
> >> after I
> >> > merge from commit d3db6730442cee05bc7c048b0bb89213d9a6000f of
> >> SpeedBoostSM
> >> > (the point at which I deemed things in a suitable state--I've made
> other
> >> > commits since then to continue progress), I am still getting the
> >> following:
> >> >
> >> > On branch master
> >> > Your branch is ahead of 'origin/master' by 59 commits.
> >> > (use "git push" to publish your local commits)
> >> > Changes not staged for commit:
> >> > (use "git add <file>..." to update what will be committed)
> >> > (use "git checkout -- <file>..." to discard changes in working
> >> directory)
> >> > modified: ../../../../AmberTools/src/
> ambertools-binary-build
> >> (new
> >> > commits)
> >> > modified: ../../../../AmberTools/src/cpptraj (new commits)
> >> >
> >> > Untracked files:
> >> > ...
> >> >
> >> > It's the business of ambertools-binary-build bearing "changes" (which,
> >> for
> >> > all I can tell with git diff, are perhaps one whitespace
> character)--same
> >> > with the cpptraj directory. When I checkout these files / directories
> >> from
> >> > master I still see "Changes not staged for commit."
> >> >
> >> > Hai pointed out a similar issue in one of my previous commits
> involving
> >> the
> >> > test cases. I'm not sure what it is, but something seems to be
> >> > persistently lacing these files with some miniscule tweak that I can't
> >> help
> >> > but make--I'm not doing anything to these files deliberately. Can
> anyone
> >> > suggest what might be going on?
> >> >
> >> > Cheers,
> >> >
> >> > Dave
> >> > _______________________________________________
> >> > AMBER-Developers mailing list
> >> > AMBER-Developers.ambermd.org
> >> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> >>
> >>
> >>
> >> --
> >> -------------------------
> >> Daniel R. Roe
> >> Laboratory of Computational Biology
> >> National Institutes of Health, NHLBI
> >> 5635 Fishers Ln, Rm T900
> >> Rockville MD, 20852
> >> https://www.lobos.nih.gov/lcb
> >>
> >> _______________________________________________
> >> AMBER-Developers mailing list
> >> AMBER-Developers.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber-developers
> >>
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>
>
>
> --
> -------------------------
> Daniel R. Roe
> Laboratory of Computational Biology
> National Institutes of Health, NHLBI
> 5635 Fishers Ln, Rm T900
> Rockville MD, 20852
> https://www.lobos.nih.gov/lcb
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
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Received on Wed Sep 20 2017 - 12:00:05 PDT
