Hello devs,
Has anyone seen this problem? It looks like a git permissions issue, but
that is very odd since I can do a clean
git clone gitosis.git.ambermd.org:/amber.git <amber install directory>
without problems. However, if I then do
git pull
git submodule update --init
Submodule 'AmberTools/src/ambertools-binary-build' (
https://github.com/Amber-MD/ambertools-binary-build) registered for path
'AmberTools/src/ambertools-binary-build'
Submodule 'AmberTools/src/build-bot/ambertools-test'
(git.github.com:Amber-MD/ambertools-test)
registered for path 'AmberTools/src/build-bot/ambertools-test'
Submodule 'AmberTools/src/build-bot/docker-amber-build-box'
(git.github.com:Amber-MD/docker-amber-build-box)
registered for path 'AmberTools/src/build-bot/docker-amber-build-box'
Submodule 'AmberTools/src/cphstats' (git.github.com:/Amber-MD/cphstats.git)
registered for path 'AmberTools/src/cphstats'
Submodule 'AmberTools/src/cpptraj' (git.github.com:/Amber-MD/cpptraj.git)
registered for path 'AmberTools/src/cpptraj'
Submodule 'AmberTools/src/parmed' (git.github.com:/ParmEd/ParmEd.git)
registered for path 'AmberTools/src/parmed'
Submodule 'AmberTools/src/pdb4amber' (git.github.com:/Amber-MD/pdb4amber)
registered for path 'AmberTools/src/pdb4amber'
Submodule 'AmberTools/src/pytraj' (git.github.com:/Amber-MD/pytraj.git)
registered for path 'AmberTools/src/pytraj'
Cloning into 'AmberTools/src/ambertools-binary-build'...
remote: Counting objects: 1700, done.
remote: Compressing objects: 100% (71/71), done.
remote: Total 1700 (delta 60), reused 65 (delta 32), pack-reused 1597
Receiving objects: 100% (1700/1700), 246.98 KiB, done.
Resolving deltas: 100% (1012/1012), done.
Submodule path 'AmberTools/src/ambertools-binary-build': checked out
'18c419831a106b836ed60bf2296c241a44a4714e'
Cloning into 'AmberTools/src/build-bot/ambertools-test'...
Permission denied (publickey).
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
Clone of 'git.github.com:Amber-MD/ambertools-test' into submodule path
'AmberTools/src/build-bot/ambertools-test' failed
[cerutti.casegroup1 amber3]$ ls AmberTools/src/build-bot/
It looks like a permissions issue, but I'm not certain. The directory
AmberTools/src/build-bot/ certainly exists, and I'm assuming that it wants
to clone a new directory ambertools-test/ into that, but at present I don't
see ambertools-test/. I've been trying to clone a new repo because I've
been having this same problem when I try to update the current repo I've
been working in. Am I missing something obvious?
Thanks!
Dave
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Received on Mon Jun 12 2017 - 08:30:03 PDT
