Oups. I forgot: gcc-4.4.7 on Red Hat 6.3
Gerald.
On 03/10/2017 09:07 PM, Daniel Roe wrote:
> What version gcc out of curiosity?
>
> On Fri, Mar 10, 2017 at 3:00 PM Gerald Monard <
> Gerald.Monard.univ-lorraine.fr> wrote:
>
>> Hello,
>>
>> It builds for me now (gcc + cuda 8.0).
>>
>> Gerald.
>>
>> On 03/10/2017 07:34 PM, Ray Luo wrote:
>>> Gerald,
>>>
>>> After I "git add" these files by force, looks like they are in. Could
>>> you check whether you can see these files?
>>>
>>> I'm compiling a "git clean -xfd"-ed version.
>>>
>>> Ray
>>> --
>>> Ray Luo, Ph.D.
>>> Professor of Structural Biology/Biochemistry/Biophysics,
>>> Chemical Physics, Biomedical Engineering, and Chemical Engineering
>>> Department of Molecular Biology and Biochemistry
>>> University of California, Irvine, CA 92697-3900
>>>
>>>
>>> On Fri, Mar 10, 2017 at 8:30 AM, Gerald Monard
>>> <Gerald.Monard.univ-lorraine.fr> wrote:
>>>> Hello,
>>>>
>>>> When I compare the "original" (=downloaded) version of
>>>> cusplibrary-0.5.1, I can see the following files missing in the amber
>>>> git tree:
>>>> ./build
>>>> ./build/build-env.py
>>>> ./build/g++.py
>>>> ./build/nvcc.py
>>>> ./cusp
>>>> ./cusp/detail
>>>> ./cusp/detail/config.h
>>>>
>>>> All the best,
>>>>
>>>> Gerald.
>>>>
>>>> On 03/10/2017 02:39 PM, Jason Swails wrote:
>>>>> On Fri, Mar 10, 2017 at 8:12 AM, Daniel Roe <daniel.r.roe.gmail.com>
>> wrote:
>>>>>
>>>>>> As of commit 372e01050807ea56cfe36e8164a4f8b4d59b9d1b, still broken.
>> Same
>>>>>> error.
>>>>>>
>>>>>> ```
>>>>>> /usr/local/cuda-7.5/bin/nvcc -gencode arch=compute_20,code=sm_20
>>>>>> -gencode arch=compute_30,code=sm_30 -gencode
>>>>>> arch=compute_50,code=sm_50 -gencode arch=compute_52,code=sm_52
>>>>>> -gencode arch=compute_53,code=sm_53 -use_fast_math -O3 -ccbin g++
>>>>>> -I../cusplibrary-0.5.1 -o cuda_cg_wrapper.o -c cuda_cg_wrapper.cu
>>>>>> -DCUSP -DPCG -DJacobi -DDIA
>>>>>> In file included from cuda_cg_wrapper.cu:832:0:
>>>>>> ../cusplibrary-0.5.1/cusp/csr_matrix.h:23:32: fatal error:
>>>>>> cusp/detail/config.h: No such file or directory
>>>>>> #include <cusp/detail/config.h>
>>>>>> ```
>>>>>
>>>>>
>>>>>> File is indeed missing:
>>>>>>
>>>>>> ```
>>>>>> $ cd $AMBERHOME/AmberTools/src/pbsa
>>>>>> $ ls ../cusplibrary-0.5.1/cusp/detail/config.h
>>>>>> ls: cannot access ../cusplibrary-0.5.1/cusp/detail/config.h: No such
>>>>>> file or directory
>>>>>> ```
>>>>>
>>>>>
>>>>>> There is no config.h anywhere in the cusp directory. Have you tested
>>>>>> by pulling a fresh copy into a new directory and then attempting to
>>>>>> configure/install? Am I the only one seeing this?
>>>>>>
>>>>>
>>>>> config.h is in .gitignore (since we don't want to track *our*
>> config.h).
>>>>> This is preventing Ray from adding it and "git status" from finding it.
>>>>>
>>>>> I've fixed this so it should ignore *only* the config.h files that our
>>>>> configure script generates..
>>>>>
>>>>> @Ray, try adding it again. And after you do, please try a fresh clone
>> and
>>>>> build (which would have caught this missing file) and make sure that
>> works
>>>>> first.
>>>>>
>>>>> All the best,
>>>>> Jason
>>>>>
>>>>
>>>> --
>>>>
>> ____________________________________________________________________________
>>>>
>>>> Prof. Gerald MONARD
>>>> Directeur du mésocentre EXPLOR
>>>> Université de Lorraine
>>>> Boulevard des Aiguillettes B.P. 70239
>>>> F-54506 Vandoeuvre-les-Nancy, FRANCE
>>>>
>>>> e-mail : Gerald.Monard.univ-lorraine.fr
>>>> phone : +33 (0)372.745.279
>>>> web : http://www.monard.info
>>>>
>>>>
>> ____________________________________________________________________________
>>>>
>>>>
>>>> _______________________________________________
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>>>> AMBER-Developers.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>>
>>> _______________________________________________
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>>> AMBER-Developers.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>>
>>
>> --
>>
>> ____________________________________________________________________________
>>
>> Prof. Gerald MONARD
>> Directeur du mésocentre EXPLOR
>> Université de Lorraine
>> Boulevard des Aiguillettes B.P. 70239
>> F-54506 Vandoeuvre-les-Nancy, FRANCE
>>
>> e-mail : Gerald.Monard.univ-lorraine.fr
>> phone : +33 (0)372.745.279
>> web : http://www.monard.info
>>
>>
>> ____________________________________________________________________________
>>
>>
>> _______________________________________________
>> AMBER-Developers mailing list
>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
--
____________________________________________________________________________
Prof. Gerald MONARD
Directeur du mésocentre EXPLOR
Université de Lorraine
Boulevard des Aiguillettes B.P. 70239
F-54506 Vandoeuvre-les-Nancy, FRANCE
e-mail : Gerald.Monard.univ-lorraine.fr
phone : +33 (0)372.745.279
web : http://www.monard.info
____________________________________________________________________________
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Received on Fri Mar 10 2017 - 13:30:03 PST
