Hi,
Feng, I saw your commit fixing this, but i have not tested it yet.
Another thing that needs to be fixed in the Amber16 update is these
permissions:
Jul 29 4:34:14pm haswell1.ten 232$ /usr/local/amber/amber16/test/nfe ll
4 -rw-r--r-- 1 530 Jul 27 03:18 run-parallel.sh
4 -rw-r--r-- 1 506 Jul 27 03:18 run-pmemd-parallel.sh
4 -rw-r--r-- 1 447 Jul 27 03:18 run-pmemd-serial.sh
4 -rw-r--r-- 1 454 Jul 27 03:18 run-serial.sh
cd nfe && ./run-serial.sh
/bin/sh: ./run-serial.sh: Permission denied
make[2]: [test.nfe.serial] Error 126 (ignored)
scott
On Wed, Jul 27, 2016 at 07:51:27PM -0400, Feng Pan wrote:
> Hi, Scott
>
> Thanks for the check and I got the issue. I will rewrite the amflsh to
> close/reopen codes.
>
> Best
> Feng
>
> On Wed, Jul 27, 2016 at 4:34 PM, Scott Brozell <sbrozell.rci.rutgers.edu>
> wrote:
>
> > Hi,
> >
> > I just committed a workaround for building pmemd.mic_native which
> > affects other pmemd executables.
> > The recent nfe commits in the master as well as update 4 for Amber 16
> > have broken the build for this and probably pmemd.mic_offload and
> > pmemd.mic_native.MPI as well although i have not checked for the latter
> > two.
> >
> > Detailed comments are in commit e672566f293a810f34a708dd67e0ed854089999f
> > Here's the gist:
> > the call to amflsh was commented out;
> > amflsh should be permanently replaced with close/reopen per comments in
> > various pmemd source files.
> >
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Received on Fri Jul 29 2016 - 14:00:03 PDT
