On Wed, Jun 08, 2016, Claudia Ramírez wrote:
>
> I did a git pull on Monday (June 6), with gnu 4.8 compilers and doing just
> ./configure gnu (serial for now) in Ubuntu 14.04 LTS. And it has 4 tests on
> AmberTools that aren't working (this is without my modifications), and I
> don't know why. I'm attaching the log file to see if anyone could help me
> make it work.
All the problems are python-related problems, related either to pytraj or
to the sander api interface.
What is the PYTHON variable in your config.h? If you are not already
using a miniconda python, try going to $AMBERHOME/AmberTools/src and running
configure_python. Then go back to AMBERHOME and re-run configure.
[I still am pushing the (so-far, minority) viewpoint that all users should
be offered the choice to install the miniconda python. Users that have both
experience with python, and the desire/need to use a different interpreter,
are welcome to decline the offer. But configure2 is still prone to deciding
that the python in a user's path is OK when it is in fact not OK. So, letting
us know which python your Amber installation is using would be a help here.]
....dac
_______________________________________________
AMBER-Developers mailing list
AMBER-Developers.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber-developers
Received on Wed Jun 08 2016 - 11:00:02 PDT
