It's definitely a mistake. You can remove that entry. That was put there by someone that is working exclusively on pmemd and either committed that change by accident or didn't understand its effect.
> On Mar 15, 2016, at 6:33 PM, Gerald Monard <Gerald.Monard.univ-lorraine.fr> wrote:
>
> Hi,
>
> has anybody tried to modify anything in the AmberTools directory recently?
>
> I have the following problem:
> $ git add AmberTools/src/Makefile
> The following paths are ignored by one of your .gitignore files:
> AmberTools/src
> Use -f if you really want to add them.
> fatal: no files added
>
> Then:
> $ git blame .gitignore
> 0258f16d (David A. Case 2010-03-28 13:36:46 -0400 1) *~
> d0cfb2ef (Benjamin P. Roberts 2010-12-03 12:48:12 -0500 2) .*.sw[op]
> bb8df4c7 (Mark Williamson 2011-03-27 19:43:30 +0100 3) *.o
> bb8df4c7 (Mark Williamson 2011-03-27 19:43:30 +0100 4) _*.f
> bb8df4c7 (Mark Williamson 2011-03-27 19:43:30 +0100 5) *.lo
> bb8df4c7 (Mark Williamson 2011-03-27 19:43:30 +0100 6) *.mod
> bb8df4c7 (Mark Williamson 2011-03-27 19:43:30 +0100 7) *.a
> bb8df4c7 (Mark Williamson 2011-03-27 19:43:30 +0100 8) *.la
> 23c5c45e (Jason Swails 2011-06-20 01:00:11 -0600 9) *.pyc
> b62f049b (Jason Swails 2012-11-03 00:46:25 -0400 10) numprocs
> 745dff54 (Jason Swails 2014-09-19 08:08:06 -0400 11)
> AmberTools/src/*/build/
> ee7c8c92 (Jason Swails 2015-04-30 15:11:01 -0400 12) ._*
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 13)
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 14)
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 15) .gitignore
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 16) AmberTools/*
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 17) amber.csh
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 18) amber.sh
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 19) config.h
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 20) lib64
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 21) share
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 22) src/config.h
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 23)
> AmberTools/src/netcdf-fortran-4.2/fortran/nfconfig.in
> 634415d7 (Nitin Rai 2016-01-08 16:18:52 +0530 24)
>
> Why is AmberTools/* in .gitignore?
>
> Gerald.
>
> --
> ____________________________________________________________________________
>
> Prof. Gerald MONARD
> SRSMC, Université de Lorraine, CNRS
> Boulevard des Aiguillettes B.P. 70239
> F-54506 Vandoeuvre-les-Nancy, FRANCE
>
> e-mail : Gerald.Monard.univ-lorraine.fr
> tel. : +33 (0)383.684.381
> fax : +33 (0)383.684.371
> web : http://www.monard.info
>
> ____________________________________________________________________________
>
>
> _______________________________________________
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Received on Tue Mar 15 2016 - 17:00:03 PDT
