Re: [AMBER-Developers] Multi-thread make is broken again

From: Ray Luo <rluo.uci.edu>
Date: Mon, 22 Feb 2016 11:45:20 -0800

Never mind, I probably did source "amber.sh"

Ray

--
Ray Luo, Ph.D.
Professor
Biochemistry, Molecular Biophysics, Chemical Physics,
Chemical and Biomedical Engineering
University of California, Irvine, CA 92697-3900
On Mon, Feb 22, 2016 at 11:44 AM, Ray Luo <rluo.uci.edu> wrote:
> Hi All,
>
> Looks like the multi-thread make is broken again ...
>
> I used "make -j 8 install"
>
> All the best,
>
> Ray
>
> /usr/bin/ld: warning: libfftw3.so.3, needed by
> /home/rayl/amber-master-fresh7/lib/libsander.so, not found (try using
> -rpath or -rpath-link)
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_alloc_complex'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_execute_dft_r2c'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_plan_many_dft_r2c'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_alloc_real'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_plan_many_dft_c2r'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_free'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_execute_dft_c2r'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_destroy_plan'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_plan_dft_c2r_3d'
> /home/rayl/amber-master-fresh7/lib/libsander.so: undefined reference
> to `fftw_plan_dft_r2c_3d'
> collect2: ld returned 1 exit status
> make[4]: *** [cpptraj] Error 1
> make[4]: Leaving directory
> `/home/rayl/amber-master-fresh7/AmberTools/src/cpptraj/src'
> make[3]: *** [serial] Error 2
> make[3]: Leaving directory
> `/home/rayl/amber-master-fresh7/AmberTools/src/cpptraj'
> make[2]: *** [cpptraj] Error 2
> make[2]: Leaving directory `/home/rayl/amber-master-fresh7/AmberTools/src'
> make[1]: *** [serial] Error 2
> make[1]: Leaving directory `/home/rayl/amber-master-fresh7/AmberTools/src'
> make: *** [install] Error 2
>
>
>
> --
> Ray Luo, Ph.D.
> Professor
> Biochemistry, Molecular Biophysics, Chemical Physics,
> Chemical and Biomedical Engineering
> University of California, Irvine, CA 92697-3900
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Received on Mon Feb 22 2016 - 12:00:04 PST