FYI everyone - if we insist on using Git Hub for development of various components can we at least try to make sure the logs are pulled over as well when things are merged into the main AMBER tree. This is important if others look into the code - if someone else has to take over development down the road etc etc.
E.g. if I do a 'git log' of README.md in parmed right now all I see is a bunch of squashes and merges.
commit c7e3081ba7df076e540bf68338651daafd3597f1
Author: Jason Swails <jason.swails.gmail.com>
Date: Mon Feb 15 06:15:21 2016 -0500
Squashed pull of ParmEd's GH repo
commit 3931189d7343d202f5cff8a6c14b86a9161b9e70
Author: Jason Swails <jason.swails.gmail.com>
Date: Tue Nov 24 22:55:09 2015 -0500
Merge Github development of ParmEd into master.
commit 9507a4e9342d87c648aafbb9af1890c9d88b77eb
Author: Jason Swails <jason.swails.gmail.com>
Date: Wed Nov 4 07:36:09 2015 -0500
Squash subtree pull from parmed_github
Thanks,
All the best
Ross
> Begin forwarded message:
>
> From: git repository hosting <gitosis.amber.sdsc.edu>
> Subject: [GIT] git repository for AMBER: Squashed pull of ParmEd's GH repo
> Date: February 15, 2016 at 03:16:50 PST
> To: cvs-notification.ambermd.org
> Reply-To: bounce.ambermd.org
>
>
> The project "git repository for AMBER":
>
> The branch, master has been updated
> via c7e3081ba7df076e540bf68338651daafd3597f1 (commit)
> from 5ce0bf1a3a6bee2a895e39e120ddcb06659b6c89 (commit)
>
>
> - Log -----------------------------------------------------------------
> commit c7e3081ba7df076e540bf68338651daafd3597f1
> Author: Jason Swails <jason.swails.gmail.com>
> Date: Mon Feb 15 06:15:21 2016 -0500
>
> Squashed pull of ParmEd's GH repo
>
> -----------------------------------------------------------------------
>
> Summary of changes:
> AmberTools/src/parmed/README.md | 7 +-
> AmberTools/src/parmed/parmed/__init__.py | 2 +-
> AmberTools/src/parmed/parmed/amber/_amberparm.py | 4 +-
> AmberTools/src/parmed/parmed/amber/parameters.py | 6 +-
> AmberTools/src/parmed/parmed/formats/pqr.py | 7 +-
> AmberTools/src/parmed/parmed/modeller/residue.py | 4 +-
> AmberTools/src/parmed/parmed/structure.py | 6 +-
> AmberTools/src/parmed/parmed/tools/actions.py | 15 +-
> AmberTools/src/parmed/parmed/tools/changeradii.py | 164 ++++++++++++---------
> AmberTools/src/parmed/parmed/topologyobjects.py | 64 ++++----
> AmberTools/src/parmed/parmed/utils/io.py | 14 +-
> AmberTools/src/parmed/parmed/utils/pandautils.py | 10 +-
> AmberTools/src/parmed/test/test_parmed_amber.py | 30 ++--
> AmberTools/src/parmed/test/test_parmed_formats.py | 14 +-
> AmberTools/src/parmed/test/test_parmed_modeller.py | 4 +-
> AmberTools/src/parmed/test/test_parmed_pandas.py | 18 +--
> AmberTools/src/parmed/test/test_parmed_residue.py | 31 ++--
> .../src/parmed/test/test_parmed_serialization.py | 3 +-
> .../src/parmed/test/test_parmed_structure.py | 10 +-
> .../src/parmed/test/test_parmed_topologyobjects.py | 22 +--
> .../src/parmed/test/test_parmedtools_actions.py | 33 +++--
> .../src/parmed/test/test_parmedtools_parmlist.py | 28 +++-
> AmberTools/src/parmed/test/utils.py | 8 +-
> 23 files changed, 282 insertions(+), 222 deletions(-)
>
> --
> git repository for AMBER
>
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Received on Mon Feb 15 2016 - 09:00:08 PST
