Ah ha!!! It looks like this may have indeed worked...
Just changed the libnetcdff.a to .so (and only added --enable-static=no to the 4.2 config).
Serial Amber and AmberTools compiled with this and the test cases pass. :-)
Will test it with parallel and GPU tomorrow but looking good.
I owe you a beer Tim.
All the best
Ross
> On Oct 20, 2015, at 20:45, Timothy Giese <timothyjgiese.gmail.com> wrote:
>
> then you can try to avoid compiling libnetcdf.a entirely
> by configuring it with ./configure --enable-static=no
>
> and then only link to the so files, by changing amber's config.h from
>
> NETCDF=$(INCDIR)/netcdf.mod
> NETCDFLIB=$(LIBDIR)/libnetcdf.a
> NETCDFLIBF=$(LIBDIR)/libnetcdff.a $(LIBDIR)/libnetcdf.a
>
> to
>
> NETCDF=$(INCDIR)/netcdf.mod
> NETCDFLIB=$(LIBDIR)/libnetcdf.so
> NETCDFLIBF=$(LIBDIR)/libnetcdff.so $(LIBDIR)/libnetcdf.so
>
>
>
>
> On Tue, Oct 20, 2015 at 11:01 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
>
>>> Begin forwarded message:
>>>
>>> From: David A Case <dacase.scarletmail.rutgers.edu>
>>> Date: October 20, 2015 at 20:00:32 PDT
>>> To: Ross Walker <ross.rosswalker.co.uk>
>>> Subject: Re: [AMBER-Developers] Problems with AmberTools 15 and
>> netcdf-fortran-4.2 compile
>>>
>>> On Tue, Oct 20, 2015, Ross Walker wrote:
>>>>
>>>> The odd thing is that netcdf-4.3.0 seems to compile fine, it is just
>>>> the netcdf-fortan-4.2 that fails. How hard would it be to switch to
>>>> netcdf-4.3.0 for everything?
>>>
>>> There is no netcdf-fortran-4.3, as far as I can tell. Released version
>> is
>>> 4.2. You could try what is on github, but that seems like a long shot.
>>>
>>> For Tim: this is not our code, so one would have to grok a pretty complex
>>> build script (lots of autotools complexity) to replace libgfortran.a with
>>> libgfortran.so. Still, might be worth some effort.
>>>
>>> ....dac
>>>
>>
>>
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Received on Tue Oct 20 2015 - 22:00:03 PDT
