pytraj has changed the most of any program since the amber15-with-patches
branch was cut. I'm focusing only on the release candidate branch for now,
and I don't think that Hai has a Mac to test this out on.
Hai, can you take a look at this? (Particularly gdt.cpp's use of "toupper")
and see if you can figure out where the ambiguity is coming from and fix it?
On Wed, Apr 8, 2015 at 9:13 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
> Hi Peeps,
>
> I am getting the following error compiling on OSX 10.10 for the latest
> AMBER git tree. I have not tried the latest AmberTools release candidate so
> don't know if it happens there as well.
>
> arch i386 -pipe -I/Users/rcw/amber/amber//AmberTools/src/cpptraj//src/
> -I/Users/rcw/Dropbox/amber/amber/AmberTools/src/pytraj/pytraj/
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> -c /Users/rcw/Dropbox/amber/amber/AmberTools/src/pytraj/pytraj/gdt/gdt.cpp
> -o
> build/temp.macosx-10.10-intel-2.7/Users/rcw/Dropbox/amber/amber/AmberTools/src/pytraj/pytraj/gdt/gdt.o
> -O0 -ggdb
> /Users/rcw/Dropbox/amber/amber/AmberTools/src/pytraj/pytraj/gdt/gdt.cpp:1010:9:
> warning: conversion from string literal to 'char *' is
> deprecated [-Wc++11-compat-deprecated-writable-strings]
> PyErr_BadInternalCall();
> ^
> /System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7/pyerrors.h:220:56:
> note: expanded from macro
> 'PyErr_BadInternalCall'
> #define PyErr_BadInternalCall() _PyErr_BadInternalCall(__FILE__, __LINE__)
> ^
> <scratch space>:406:1: note: expanded from here
> "/Users/rcw/Dropbox/amber/amber/AmberTools/src/pytraj/pytraj/gdt/gdt.cpp"
> ^
> /Users/rcw/Dropbox/amber/amber/AmberTools/src/pytraj/pytraj/gdt/gdt.cpp:16626:24:
> error: call to 'toupper' is ambiguous
> *buf = toupper(*buf);
> ^~~~~~~
> /usr/include/ctype.h:298:1: note: candidate function
> toupper(int _c)
> ^
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/cctype:157:38:
> note: candidate
> function
> inline _LIBCPP_INLINE_VISIBILITY int toupper(int __c) {return
> __libcpp_toupper(__c);}
> ^
> 1 warning and 1 error generated.
> error: command 'cc' failed with exit status 1
> make[2]: *** [pytraj] Error 1
> make[1]: *** [serial] Error 2
> make: *** [install] Error 2
>
>
> /\
> \/
> |\oss Walker
>
> ---------------------------------------------------------
> | Associate Research Professor |
> | San Diego Supercomputer Center |
> | Adjunct Associate Professor |
> | Dept. of Chemistry and Biochemistry |
> | University of California San Diego |
> | NVIDIA Fellow |
> | http://www.rosswalker.co.uk | http://www.wmd-lab.org |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> ---------------------------------------------------------
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not
> be read every day, and should not be used for urgent or sensitive issues.
>
>
> _______________________________________________
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>
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Apr 09 2015 - 06:30:02 PDT
