Re: [AMBER-Developers] gcc: pytraj/_shared_methods.cpp: No such file or directory

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 26 Mar 2015 14:16:34 -0400

On Thu, Mar 26, 2015 at 2:13 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:

> Hi,
>
> I see the same problem/behavior with intel compilers:
>
> building 'pytraj._shared_methods' extension
> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall
> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC
> -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
> -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC
> -I/uufs/
> chpc.utah.edu/common/home/u0827715/Amber/GIT/amber-intel/AmberTools/src/cpptraj//src/
>
> -I/uufs/chpc.utah.edu/common/home/u0827715/Amber/GIT/amber-intel/AmberTools/src/pytraj/pytraj/
> -I/usr/include/python2.6 -c
> /uufs/
> chpc.utah.edu/common/home/u0827715/Amber/GIT/amber-intel/AmberTools/src/pytraj/pytraj/_shared_methods.cpp
> -o build/temp.linux-x86_64-2.6/uufs/
> chpc.utah.edu/common/home/u0827715/Amber/GIT/amber-intel/AmberTools/src/pytraj/pytraj/_shared_methods.o
> -O0 -ggdb
> gcc: /uufs/
> chpc.utah.edu/common/home/u0827715/Amber/GIT/amber-intel/AmberTools/src/pytraj/pytraj/_shared_methods.cpp
> :
> No such file or directory
> gcc: no input files
>
> Again, gcc being used instead of icc (also seems awkward that it's
> even calling gcc for a .cpp file). Haven't been able to pin down
> what's happening yet.
>

‚ÄčThis is a Python thing. Not much you can do about it (nor is there much
you *should* do about it). Basically, Python calls the compilers that was
used to build Python itself when building extensions.

But I think there might be an accidental omission of a Cythonized C++ file
here...

All the best,
Jason

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Mar 26 2015 - 11:30:05 PDT
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