Re: [AMBER-Developers] rism - Netcdf problems?

From: T Luchko (Lists) <"T>
Date: Tue, 28 Jan 2014 22:20:49 -0800

On Jan 28, 2014, at 9:12 PM, Ross Walker <ross.rosswalker.co.uk> wrote:

> Hi All,
>
> Has anybody else seen issues with netcdf shared libraries?
>
> Latest git tree as of 9pm PST today.
>
> ./configure gnu
> make -j8 install
> make test
>
> cd leap/glycam && ./Run_tests.bash clean
> cd nab && make -k test testrism
> make[3]: Entering directory
> `/cbio/jclab/home/rcw/amber/AmberTools/test/nab'
> Running test to make dna duplex:
>
> ./duplex: error while loading shared libraries: libnetcdf.so.7: cannot
> open shared object file: No such file or directory
> ./Run.duplex: Program error
> make[3]: *** [duplex_test] Error 1
> Running test to computed 3DNA deformation energies:
>
> ./deform: error while loading shared libraries: libnetcdf.so.7: cannot
> open shared object file: No such file or directory
> ./Run.deform: Program error
> make[3]: *** [deform_test] Error 1
> Running Reflexive test:
>
> ./refl: error while loading shared libraries: libnetcdf.so.7: cannot open
> shared object file: No such file or directory
> ./Run.reflexive: Program error
> make[3]: *** [reflexive_test] Error 1
> Running test of sub() and gsub()
>
>
> ... etc ...
>
> does this for ALL the rism tests and then everything looks good
>
>

I did a fresh pull and canít reproduce this (Mac 10.9.1, gcc 4.7).

BTW, from your log, this is a NAB issue and not RISM specific. No idea what the problem is though.

Tyler


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Received on Tue Jan 28 2014 - 22:30:02 PST
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