It's never proven to be a problem for me, but I'd sooner rely on Dave's
advice and experience in this matter.
I would like to keep my instructional wiki up-to-date to the best of my
ability, so if the iAPBS/sander.APBS build instructions change
significantly, I'd certainly appreciate a heads-up so I can update my wiki.
Thanks!
Jason
On Thu, Jul 5, 2012 at 4:40 PM, Robert Konecny <rok.ucsd.edu> wrote:
> Hi Jason,
>
> I can get rid of this dependence in sander.APBS, that should not be a
> problem.
>
> Thanks,
>
> Robert
>
> On Thu, Jul 05, 2012 at 10:20:11AM -0400, Jason Swails wrote:
> > I now remember why I was suggesting it for Amber (having read it on my
> Wiki
> > as I was changing things). sander.APBS (in particular, the iAPBS part)
> > relies on it (I don't think that has changed since the last time I tried
> > building it).
> >
> > On Thu, Jul 5, 2012 at 10:08 AM, Jason Swails <jason.swails.gmail.com
> >wrote:
> >
> > >
> > >
> > > On Thu, Jul 5, 2012 at 8:10 AM, David A Case <case.biomaps.rutgers.edu
> >wrote:
> > >
> > >> On Wed, Jul 04, 2012, Jason Swails wrote:
> > >>
> > >> > The SUSE package manager is zypper. You will need to run a command
> > >> like:
> > >> >
> > >> > sudo zypper install patch
> > >> >
> > >> > Note this is not the only package you will need to install. You
> will
> > >> also
> > >> > need the packages gcc, gcc-c++, gcc-fortran, libtool,
> xorg-x11-devel,
> > >> > xorg-x11-libXt-devel, libbz2-devel, autoconf, and automake if you
> don't
> > >> > already have those packages installed.
> > >>
> > >> Do we (or should we) be requiring autoconf and automake for end
> users? My
> > >> understanding was the developers would run such programs, and provide
> the
> > >> resulting configure script and Makefile for end-users.
> > >>
> > >
> > > I don't think it should be required, but since part of AmberTools we
> > > develop and release is managed via autotools, I figured it's not a bad
> > > thing to suggest to those users whose added cost is just typing the
> word
> > > "autoconf" and "automake" to their apt-get/yum/zypper command. Since
> these
> > > platforms have 'just worked' without needing to modify any parts of the
> > > MTK++ build process, though, it's probably best to omit these from the
> list
> > > of required programs for Amber... I'll update my Wiki accordingly
> > >
> > > All the best,
> > > Jason
> > >
> > > --
> > > Jason M. Swails
> > > Quantum Theory Project,
> > > University of Florida
> > > Ph.D. Candidate
> > > 352-392-4032
> > >
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Jul 05 2012 - 14:30:03 PDT
