Re: [AMBER-Developers] Amber12 release candidate 2

From: Lin Fu <linfu3200.gmail.com>
Date: Thu, 22 Mar 2012 11:23:06 -0400

Hi Martin,

The mtkpp can be compiled successfully on the cygwin, as long as "#include
<time.h>" has been added in the some cpp files under the dir of
mtkpp/tests. But I don't have time to test all the binary generated from
mtkpp since the cygwin on my laptop is quite slow.

Best Regards,
Fu Lin
2012/3/22 Martin Peters <martin.b.peters.me.com>

> Hi Lin,
>
> Did you test that fix? Did mtkpp compile? If so, could someone with the
> necessary write privileges make the change?
>
> Cheers,
> Martin
>
> On 22 Mar 2012, at 01:19, Lin Fu wrote:
>
> > The problem is variable $host in the configure file. In the cygwin, the
> > host is "i686-pc-cygwin", rather than "i686-pc-linux-gnu" or
> > "x86_64-unknown-linux-gnu" in the common Linux OS. Therefore, the "case"
> > selection will always go to the last option
> > with "platform=UNKNOW". If adding extra condition for cygwin, it will
> > configure properly.
> >
> > case "${host}" in
> > *-*-linux* | **-*- cygwin** ) platform=LINUX
> > tmp_FC='ifort ifc pgf90 xlf90_r f90'
> > tmp_CC='gcc'
> > tmp_CXX='gcc'
> > is_linux=yes
> >
> >
> >> vim configuration
> > ---------------------
> > ---------------------
> > ---------------------
> > 16623 case "${host}" in
> > 16624 *-*-linux*) platform=LINUX
> > 16625 tmp_FC='ifort ifc pgf90 xlf90_r f90'
> > 16626 tmp_CC='gcc'
> > 16627 tmp_CXX='gcc'
> > 16628 is_linux=yes
> > 16629
> > 16630 $as_echo "#define HOST_LINUX 1" >>confdefs.h
> > 16631
> > 16632 ;;
> > 16633 *-apple-darwin*) platform=MACINTOSH
> > 16634 tmp_FC='f90 xlf90_r'
> > 16635 tmp_CC='gcc'
> > 16636 tmp_CXX='gcc'
> > 16637 is_darwin=yes
> > 16638 if test "${bMKL1}" = "no" -o "${bMKL2}" = "no" ; then
> > 16639 APPLE_LDFLAGS="-framework Accelerate"
> > 16640 else
> > 16641 APPLE_LDFLAGS=""
> > 16642 fi
> > 16643 APPLE_LDFLAGS="$APPLE_LDFLAGS -static"
> > 16644 APPLE_LIBS="-lz"
> > 16645 LDFLAGS="$APPLE_LDFLAGS $LDFLAGS"
> > 16646 LIBS="$APPLE_LIBS $LIBS"
> > 16647
> > 16648 $as_echo "#define HOST_DARWIN 1" >>confdefs.h
> > 16649
> > 16650 ;;
> > 16651 *) platform=UNKNOWN
> > 16652 is_unknown=yes
> > 16653 echo 'ERROR: this platform is not supported at this time!'
> > 16654 exit ;;
> > ---------------------
> > ---------------------
> > ---------------------
> >
> > 2012/3/21 Ben Roberts <ben.roberts.geek.nz>
> >
> >> I've also forwarded the relevant parts of this thread to Martin Peters,
> >> who can perhaps put something in the configure scripts to fix it more
> >> properly, e.g., by returning a non-zero exit code.
> >>
> >> On 22/03/2012, at 10:02 AM, Daniel Roe wrote:
> >>
> >>> Same issue in configure.in (line 386). I think the bottom line is,
> >>> unless someone knows that mtkpp should/does work under cygwin, it
> >>> should be disabled when '-cygwin' is specified.
> >>>
> >>> -Dan
> >>>
> >>> On Wed, Mar 21, 2012 at 2:46 PM, Jason Swails <jason.swails.gmail.com>
> >> wrote:
> >>>> But configure is automatically generated by autoconf, yes? If so, is
> >> this
> >>>> an issue with autoconf or the configure.in file?
> >>>>
> >>>> On Wed, Mar 21, 2012 at 4:39 PM, Daniel Roe <daniel.r.roe.gmail.com>
> >> wrote:
> >>>>
> >>>>> More details: MTKPP configure actually does choke under cygwin, but
> >>>>> exits with no status (hence 0), so Amber configure doesnt think
> >>>>> anything is wrong.
> >>>>>
> >>>>> The issue is on line 16654 of mtkpp/configure:
> >>>>>
> >>>>> *) platform=UNKNOWN
> >>>>> is_unknown=yes
> >>>>> echo 'ERROR: this platform is not supported at this time!'
> >>>>> exit ;;
> >>>>>
> >>>>> That should be changed to 'exit 1'.
> >>
> >>
> >> _______________________________________________
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> >> AMBER-Developers.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber-developers
> >>
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>
>
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Received on Thu Mar 22 2012 - 08:30:04 PDT
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