On 2012-02-13, at 1:22 PM, Romelia Salomon wrote:
> Hi
>
> I am having problems configuring Amber. I my system configuration is this
>
> Red Hat
> Red Hat Enterprise Linux Server release 5.7 (Tikanga)
> Kernel \r on an \m
>
> ICC
> Version 10.1
>
> GCC
> Using built-in specs.
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
> --infodir=/usr/share/info --enable-shared --enable-threads=posix
> --enable-checking=release --with-system-zlib --enable-__cxa_atexit
> --disable-libunwind-exceptions --enable-libgcj-multifile
> --enable-languages=c,c++,objc,obj-c++,java,fortran,ada
> --enable-java-awt=gtk --disable-dssi --disable-plugin
> --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre
> --with-cpu=generic --host=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.1.2 20080704 (Red Hat 4.1.2-51)
>
>
> I did a fresh checkout of the git tree. I checked the log file and it
> seems to be a problem with gcc, which makes no sense to me since I was
> configuring with intel
>
> configure: error: Need a version of gcc with -mavx
>
>
It looks like your compiler is having issues with AVX, which I turned off in a commit yesterday... (sha1 id: 780eab02b7a19b1c812292287cb25ebbf087e0f8)
If you do have this commit, can you post the seventh line of
AmberTools/src/fftw-3.3/config.log
This will give the configure command with the flags that were used.
BTW, your log file seems to indicate that it was using the Intel compiler so I'm not sure about that error. However, your Intel compiler doesn't support AVX either.
Tyler
________________________________________________________________
Tyler Luchko
Postdoctoral Associate
Case Group
BioMaPS Institute
Rutgers University
Piscataway, New Jersey
tluchko.rutgers.edu
848-445-5239
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Received on Mon Feb 13 2012 - 11:00:02 PST
