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-- Jason M. Swails Quantum Theory Project, University of Florida Ph.D. Candidate 352-392-4032 On Jul 22, 2011, at 3:06 PM, MengJuei Hsieh <mengjueh.uci.edu> wrote: > Hi, > > A undergrad project student in our lab reports that she can't find ras.pdb > and raf.pdb from the website. Although ras.pdb can be found at python > tutorial, raf.pdb is nowhere to be found. I thought it might be worthwhile > to mention that tutorial takers can use a text editor to copy the first part > of the PDB from ras-raf.pdb as ras.pdb and second part as raf.pdb, > respectively. However then I see a potential problem for this, there is a > magnesium ion in the end of ras-raf.pdb but not in the ras-raf.prmtop file. > So I guess we need to modify the ras-raf.pdb as well. > > I can add a small section into the document if you guys think it's okay to > directly modify it. :p > > Best, > -- > Mengjuei Hsieh, Molecular Biology & Biochem, Univ. of California Irvine. > > > > _______________________________________________ > AMBER-Developers mailing list > AMBER-Developers.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber-developers _______________________________________________ AMBER-Developers mailing list AMBER-Developers.ambermd.org http://lists.ambermd.org/mailman/listinfo/amber-developersReceived on Fri Jul 22 2011 - 12:30:03 PDT