logFile leap.log

source leaprc.ff99SB

#Turn on 1-4 scaling reading and writing
set default write14scale on

#  --------------------------- END OF STANDARD HEADER   ----------------------



system = loadpdb originalt.pdb



saveamberparm system start.prmtop start.crd
savepdb system start.pdb


solvatebox system TIP3PBOX 10 

Addions system Na+ 0

Addions system Cl- 0

saveamberparm system startPBC.prmtop startPBC.crd
savepdb system startPBC.pdb

quit