Re: [AMBER-Developers] Amber test concerns

From: Tyler Luchko <tluchko.rci.rutgers.edu>
Date: Sun, 23 Jan 2011 20:43:27 -0500

On 2011-01-23, at 7:50 PM, Scott Brozell wrote:

> Hi,
>
> On Wed, Jan 19, 2011 at 10:38:52PM -0500, Jason Swails wrote:
>> On Wed, Jan 19, 2011 at 9:46 PM, Tyler Luchko <tluchko.rci.rutgers.edu>wrote:
>>> On 2011-01-19, at 6:12 PM, Jason Swails wrote:
>>>
>>>> rism3d/ala && ./Run.ala.hnc && ./Run.ala.pse1 -- exits in error with
>>> sander
>>>> printing the message [ ERROR> solvcut must > 0. ]
>>>
>>> I have fixed this but haven't pushed it out yet. I'll do this ASAP.
>
> Thanks this one is fixed.
>
>>>> Amber (parallel, 2 threads):
>>>>
>>>> All sander.RISM.MPI tests failed with the message [ Fatal error in
>>>> MPI_Comm_rank: Invalid communicator, error stack: ]
>>>
>>> What are your configure options? I'm not seeing this with GNU or Intel
>>> compilers.
>
> I also see failures with all these tests using gnu 4.1.2 and mvapich2-1.5:
> ./Run.ala
> SANDER: 3D-RISM
> mpiexec: Warning: task 0 died with signal 11 (Segmentation fault).
> mpiexec: Warning: tasks 1-3 died with signal 15 (Terminated).
>

I've figured out the problem and I am implementing a solution. It should be ready Monday or Tuesday.

Tyler








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Received on Sun Jan 23 2011 - 18:00:03 PST
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