Ross,
I just tried running the same system with pmemd.cuda.MPI without restraints,
and I got the same behavior. The same error occurred after 15 steps.
-Bill
On Fri, Dec 3, 2010 at 5:20 PM, Bill Miller III <brmilleriii.gmail.com>wrote:
> Ross,
>
> I just tried running the same system with pmemd.cuda.MPI without
> restraints, and I got the same behavior. The same error occurred after 15
> steps.
>
> -Bill
>
>
> On Fri, Dec 3, 2010 at 5:17 PM, Jason Swails <jason.swails.gmail.com>wrote:
>
>> On Fri, Dec 3, 2010 at 5:10 PM, Ross Walker <ross.rosswalker.co.uk>
>> wrote:
>>
>> > Hi Bill,
>> >
>> > > I have recently been running MD with a recently checked out version of
>> > > Amber
>> >
>> > Can you confirm what you mean by 'recent'? This problem may have been
>> fixed
>> > with bugfix.11. Can you also try running without the restraints and see
>> if
>> >
>>
>> It's my build on lincoln. The last git commit id was 55886d20e, on Mon.,
>> 11/29. I don't think I've seen any cuda traffic on the CVS mailing list
>> since then.
>>
>> All the best,
>> Jason
>>
>>
>> > the problem still occurs.
>> >
>> > All the best
>> > Ross
>> >
>> > /\
>> > \/
>> > |\oss Walker
>> >
>> > ---------------------------------------------------------
>> > | Assistant Research Professor |
>> > | San Diego Supercomputer Center |
>> > | Adjunct Assistant Professor |
>> > | Dept. of Chemistry and Biochemistry |
>> > | University of California San Diego |
>> > | NVIDIA Fellow |
>> > | http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
>> > | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
>> > ---------------------------------------------------------
>> >
>> > Note: Electronic Mail is not secure, has no guarantee of delivery, may
>> not
>> > be read every day, and should not be used for urgent or sensitive
>> issues.
>> >
>> >
>> >
>> >
>> >
>> > _______________________________________________
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>> > AMBER-Developers.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>> >
>>
>>
>>
>> --
>> Jason M. Swails
>> Quantum Theory Project,
>> University of Florida
>> Ph.D. Graduate Student
>> 352-392-4032
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>> AMBER-Developers.ambermd.org
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>>
>
>
>
> --
> Bill Miller III
>
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-6715
>
--
Bill Miller III
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-6715
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Received on Fri Dec 03 2010 - 14:30:04 PST
