Re: [AMBER-Developers] sander.MPI tests randomly stall in Ubuntu 9.10

From: Lachele Foley <lfoley.ccrc.uga.edu> Date: Tue, 11 May 2010 16:41:15 -0400

--
B. Lachele Foley, PhD '92,'02
Assistant Research Scientist
Complex Carbohydrate Research Center, UGA
706-542-0263
lfoley.ccrc.uga.edu
----- Original Message -----
From: case
[mailto:case.biomaps.rutgers.edu]
To: AMBER Developers Mailing List
[mailto:amber-developers.ambermd.org]
Sent: Tue, 11 May 2010 09:00:16
-0400
Subject: Re: [AMBER-Developers] sander.MPI tests randomly stall in
Ubuntu 9.10
> On Mon, May 10, 2010, Lachele Foley wrote:
> > 
> > On that machine?  Not easily, unless there's an rpm for it.  A new
> > gcc from sources would take time I can't easily spare right now.  The
> > student is pretty good... I can ask her.  Know of an rpm??  Sigh...
> > 
> > I realize the 4.1.x compilers aren't so great, but that's what comes
> > with RHEL, even the newest.  UGA has a site license, etc.  I might
> > consider a different distro.
> 
> Red Hat is distributing gcc4.4 officially, as I understand it.  Also, the
> newer 4.4 version is scheduled to be the default in the next RHEL release.
> Anyway, this is what my sysadmin told me...see message below.
> 
> ....dave
> 
> 
> >From kabbey.biomaps.rutgers.edu  Fri Apr 23 22:26:11 2010
> 
> RedHat 6.0 beta just became available on the 21st.
> The gcc version is 4.4.3 as listed in the Packages directory.
> 
> I'd estimate at least 2 months before RH6 is released and CentOS 6 to be 
> 4-8 weeks later.
> 
> 
> Red Hat Enterprise Linux 6 Beta Available Today for Public Download
> April 21st, 2010
> by Red Hat Enterprise Linux Team
> http://press.redhat.com/2010/04/21/red-hat-enterprise-linux-6-beta-available-today-for-public-download/
> 
> 
> RedHat 6.0 beta
> 
> Base installation
> ftp://ftp.redhat.com/pub/redhat/rhel/beta/6.0/x86_64/os/
> ftp://ftp.redhat.com/pub/redhat/rhel/beta/6/x86_64/os/Packages/
> 
> Optional packages
> ftp://ftp.redhat.com/pub/redhat/rhel/beta/6/optional/x86_64/os/Packages/
> 
> 
> DVD
> ftp://ftp.redhat.com/pub/redhat/rhel/beta/6.0/x86_64/iso/
> 
> Starting with RH 5.4,
> gcc44, 4.4.0, is available (and installed on casegroup1)
> from RH/CentOS to co-exist with the default 4.1.2
> 
> The default will not change until RH 6 is released later this year. A
> beta RH 6 is not yet available.
> I assume that RH 6 will use the 4.4.x series since it is now available
> in RH 5.4.
> 
> 
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> AMBER-Developers.ambermd.org
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> 
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