Hi,
I've just done a bit of tweaking of the sander Makefile to make sander.PUPIL work again. Its linker path was broken, missing the necessary pbsa libraries, and parts of the linker path are system-specific. To address the latter, I've also made a slight change to configure.
Patch files (prepared using diff -u) are attached. Let me know if there are any questions.
Cheers,
Ben
--- Makefile.bak 2010-03-29 15:23:38.000000000 -0400
+++ Makefile 2010-03-29 15:28:39.000000000 -0400
.. -262,11 +262,11 ..
#---------------------------------------------------------------------------
sander.PUPIL$(SFX): $(NETCDF) $(PUPILOBJ) $(QMOBJ) $(FULLPIMDOBJ) \
$(LSCIVROBJ) syslib \
- nxtsec libsqm netlib configured_serial $(NCSU_OBJECTS)
+ nxtsec libsqm netlib libpbsa configured_serial $(NCSU_OBJECTS)
$(FC) -o sander.PUPIL$(SFX) $(PUPILOBJ) $(QMOBJ) $(FULLPIMDOBJ) \
- $(LSCIVROBJ) $(LIBDIR)/libsqm.a $(FLIBSF) \
+ $(LSCIVROBJ) $(LIBDIR)/libsqm.a $(LIBDIR)/libFpbsa.a $(FLIBSF) \
../lib/nxtsec.o ../lib/sys.a $(NCSU_OBJECTS) $(NETCDFLIB) \
- -lrt -lm -lc -L${PUPIL_PATH}/lib -lPUPIL -lPUPILBlind $(LDFLAGS)
+ $(PUPILLIBS) $(LDFLAGS)
#---------------------------------------------------------------------------
sander.LES$(SFX): $(NETCDF) $(LESOBJ) $(PARTPIMDOBJ) syslib nxtsec netlib \
--- configure.bak 2010-03-29 15:10:44.000000000 -0400
+++ configure 2010-03-29 15:40:39.000000000 -0400
.. -192,6 +192,7 ..
# Platform specific:
#-------------------------------------------------------------------------------
if [ `uname -s|awk '{print $1}'` = "Darwin" ]; then
+ is_mac='yes'
static='no'
osx_version=`sw_vers -productVersion | awk '{print $1}'`
case "$osx_version" in
.. -1203,6 +1204,12 ..
fi
fi
+# Configure PUPIL support
+pupillibs="-lm -lc -L\${PUPIL_PATH}/lib -lPUPIL -lPUPILBlind"
+if [ "$is_mac" != 'yes' ]; then
+ pupillibs="-lrt $pupillibs"
+fi
+
#------------------------------------------------------------------------------
# Set up the mpi compilers:
#------------------------------------------------------------------------------
.. -1394,6 +1401,9 ..
RISMSFF=$rismsff
NABLIBRISM=$nablibrism
SANDER_RISM_MPI=$sander_rism_mpi
+
+#PUPIL
+PUPILLIBS=$pupillibs
EOD
echo " "
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Received on Mon Mar 29 2010 - 13:00:03 PDT
