Hello,
Quick issue with the configure script: On line 966, changing the "=="
to '-eq' makes the configure script sh-compliant. Without that, I get
this printout on my Ubuntu machine (which uses dash)
swails.Batman:~/newamber/03.29.10/amber11/AmberTools/src$ ./configure gnu
Your AMBERHOME environment variable should be set to
/home/swails/newamber/03.29.10/amber11
Obtaining the gnu suite version:
gcc -v
The version is 4.4.1
Testing the gcc compiler:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
OK
Validating the C++ compiler version:
g++ -v
The version is 4.4.1
OK
Testing the gfortran compiler:
gfortran -O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
gfortran -O0 -c -o testp.f.o testp.f
gcc -o testp testp.c.o testp.f.o -lgfortran
OK
Testing pointer size:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o
test_pointer_size test_pointer_size.c
[: 972: 1: unexpected operator
Detected 64 bit operating system.
Testing flex:
OK
Configuring NetCDF; (may be time-consuming)
NetCDF configure succeeded.
Configuring fftw-2.1.5; (may be time-consuming)
fftw-2.1.5 configure succeeded.
The configuration file, config.h, was successfully created.
The next step is to type 'make install'
ln: creating symbolic link `./sander': File exists
The suggested change gets rid of the [: 972: 1: unexpected operator
line. Also, perhaps we throw something in (like a 2>/dev/null or an
"and it doesn't already exist" to the if statement) to the ln to
suppress the last message if the link already exists? Not a big deal,
merely an aesthetic issue
All the best,
Jason
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Mon Mar 29 2010 - 11:00:03 PDT
