Hi,
On Thu, Oct 29, 2009 at 10:59:10PM -0400, case wrote:
> On Thu, Oct 29, 2009, Ross Walker wrote:
> >
> > Has anyone else noticed problems running the test cases for AMBER Tools?
> >
> > I just tried the following with ifort l_fc_p_10.1.018 and mkl 10.1.1.019
>
> This is promising...we've had reports before about segfaults in some of
> the nab tests, but it always seemed to be on MacOSX 10.6, which I didn't
> have any access to. If you can get a failure (I assume this is Linux?),
> then we have a better chance of tracking it down.
>
> FWIW, here are the machines I usually test on:
>
> 1. Mac OSX 10.5, gcc 4.4.0 (20081219), often but not always with the Goto
> BLAS libraries.
>
> 2. Linux/intel with icc 11.1.056 and mkl 11.1.056
>
> 3. Linux/intel with icc 10.1.018 and mkl 10.0.5.025 (Note that this is pretty
> close to what Ross reports above -- same compiler anyway.) I've also tested
> with the same icc version and no MKL.
FWIW, I no longer test on an old sun, an old mac, nor an ia32
(with gnu, pgi, intel compilers) because those machines dont exist now;
those were the nightly testing platforms.
Here is the machine I manually do test on:
x86_64 Red Hat Enterprise Linux Server release 5.2 (Tikanga)
gnu 4.2.3
intel Version 10.0 Build 20070426 Package ID: l_fc_p_10.0.023
pgi 9.0-4 64-bit target on x86-64 Linux -tp k8-64e
as well as older versions of these compilers and
mkl-10.0.3.020
> > and I get a segfault on the very first test case:
> >
> > ( cd nab; make test )
> > make[1]: Entering directory
> > `/server-home/rcw/cvs_checkouts/amber11/test/nab'
> > =====================================================
> > Running test to make dna duplex:
> >
> > /bin/sh: line 1: 12593 Segmentation fault ./duplex <duplex.in
>
> This is bug 112 on bugzilla (aside from compiler/OS differences). But my
> understanding(?) was that Ben had been able to use -m32 everywhere, and to get
> things to work. [Ben: is that correct? if so, please update bug 112.]
This test passes on all the above platforms, but I have started
debugging this.
Scott
_______________________________________________
AMBER-Developers mailing list
AMBER-Developers.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber-developers
Received on Sat Oct 31 2009 - 23:30:02 PDT
