Re: amber-developers: Testing Amber Tools

From: Gustavo Seabra <gustavo.seabra.gmail.com>
Date: Tue, 29 Apr 2008 16:22:06 -0400

Just for the record: The same errors appear when using icc 8.1 (I
know... old, old, old...) May I suggest that we include a couple of
lines in the README_at file describing the minimum compiler
requirements?

Thanks,
Gustavo.

On Tue, Apr 29, 2008 at 4:04 PM, Gustavo Seabra
<gustavo.seabra.gmail.com> wrote:
> Thanks a lot Wei.
> Gustavo.
>
>
>
> On Tue, Apr 29, 2008 at 4:02 PM, <zweig.scripps.edu> wrote:
> > Dear Gustavo,
> >
> >
> > Your guess is right, GCC-3.2 is too old for gleap, actually it is the
> > boost library
> > which is causing the problem. You need at least gcc 3.4 to compile it.
> >
> > Sincerely,
> >
> > Wei
> >
> >
> >
> > > Hi All,
> > >
> > > I wonder if anyone noticed this:
> > >
> > > Apparently, the directory where the AmberTools are installed has changed
> > > to
> > > $AMBERHOME/bin. However, most of the Ambertools tests are still pointing
> > > to
> > > $AMBERHOME/exe. This is causing a bunch of test failures when running the
> > > Ambertools test.
> > >
> > > In a (probably) unrelated issue, I'm having trouble compiling gleap. All
> > > other Ambertools compile nicely, but gleap dies with the error below. I
> > > wonder if this can be a compiler issue (I'm using a somewhat old version
> > > of
> > > gcc: 3.2.3 20030502).
> > >
> > > Thanks,
> > > Gustavo.
> > >
> > > GLEAP COMPILATION ERROR:
> > > ========================
> > > rm -rf .libs _libs
> > > test -z "libnetcdf2.la " || rm -f libnetcdf2.la
> > > meric::ublas::vector_expression<E>&) [with R =
> > > boost::numeric::ublas::vector_binary<boost::numeric::ublas::vector<
> > > double, boost::numeric::ublas::unbounded_array<double,
> > > std::allocator<double> > >, boost::numeric::ublas::vector<d
> > > ouble, boost::numeric::ublas::unbounded_array<double,
> > > std::allocator<double>
> > >> >, boost::numeric::ublas::scalar_pl
> > > us<double, double> >]'
> > > numvec.cpp:298: instantiated from here
> > > ../../freelib/boost/numeric/ublas/detail/vector_assign.hpp:447: no type
> > > named `
> > > value_type' in `class
> > >
> > > boost::numeric::ublas::vector_binary<boost::numeric::ublas::vector<double,
> > > boost::numeric::ublas::unbounded_array<double, std::allocator<double> >
> > >>,
> > > boost::numeric::ublas::vector<double,
> > > boost::numeric::ublas::unbounded_array<double, std::allocator<double> >
> > >>,
> > > boost::numeric::ublas::scalar_plus<double, double> >'
> > > ../../freelib/boost/numeric/ublas/detail/vector_assign.hpp:448: no type
> > > named `
> > > value_type' in `class
> > >
> > > boost::numeric::ublas::vector_binary<boost::numeric::ublas::vector<double,
> > > boost::numeric::ublas::unbounded_array<double, std::allocator<double> >
> > >>,
> > > boost::numeric::ublas::vector<double,
> > > boost::numeric::ublas::unbounded_array<double, std::allocator<double> >
> > >>,
> > > boost::numeric::ublas::scalar_plus<double, double> >'
> > > make[3]: *** [numvec.o] Error 1
> > > make[3]: Leaving directory
> > > `/sharw/depot/amber-10/lib/amber10/i686/src/gleap/mortsrc/common'
> > > make[2]: *** [all] Error 2
> > > make[2]: Leaving directory
> > > `/sharw/depot/amber-10/lib/amber10/i686/src/gleap/mortsrc'
> > > make[1]: *** [sleap] Error 2
> > > make[1]: Leaving directory
> > > `/sharw/depot/amber-10/lib/amber10/i686/src/gleap'
> > > make: *** [install] Error 2
> > >
> >
> >
> >
>
Received on Wed Apr 30 2008 - 06:07:54 PDT
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