Hi,
On Wed, 2 Nov 2005, Ilyas Yildirim wrote:
> I have updated the latest AMBER9 code and when I tried to compile it, I
am
> getting the following error message.
>
> arde00:/home/yildirim/amber9/src>configure -opteron ifort
> AMBERHOME is set to /home/yildirim/amber9
> Setting up Amber configuration file for architecture: ifort
> Using parallel communications library: none
> .//configure: line 463: syntax error near unexpected token `<<<'
> .//configure: line 463: `<<<<<<< configure'
> arde00:/home/yildirim/amber9/src>
It appears that you have a configure containing CVS conflicts.
The <<<<<<< is used by CVS to identify conflicting file content.
CVS commands announce conflicts; be careful to watch for these and resolve
the conflicts. Since you probably have not made modifications to
configure, you probably can correct your problem via:
mv configure /home/yildirim/backups # safety first
cvs update -A -d configure # get a fresh unsticky configure
Note that ifort is no longer a valid configure architecture.
This is the output you should see:
Nov 02 5:48:28pm pusar 596> /thr/loyd/sbrozell/9/src cvsupad !$
cvsupad configure
cvs update: warning: configure was lost
U configure
Nov 02 5:54:34pm pusar 600> /thr/loyd/sbrozell/9/src ./configure
-opteron ifort
AMBERHOME is set to /usr/local/srb/9
Setting up Amber configuration file for architecture: ifort
Using parallel communications library: none
Architecture/compiler ifort is not supported (?)
Usage: ./configure [flags] [compiler/architecture]
where <compiler/architecture> is one of:
absoft, compaqf90, hpf90, ifort_ia32, ifort_ia64, ifort_em64t, pgf90,
sgi_altix, sgi_mips, sparc, xlf90_aix, xlf90_suse, xlf90_macosx, g95,
pathscale
If not specified then the compiler is guessed, but this is unreliable.
Parallel option flags:
-lam Use LAM/MPI (LAM_HOME must be set)
-mpi Use native MPI
-mpich Use MPICH (MPICH_HOME must be set)
-mpich2 Use MPICH2 (MPICH2_HOME must be set)
-nopar Explicit request of no MPI, the default
-scali Use SCALI (SCALI_HOME must be set)
Platform option flags:
-athlon Optimize for Athlon processor (intel,pgf90).
-gnucompat Add a second underscore to some symbols to maintain
GNU compatibility (pgf90).
-opteron Optimize for Opteron processor (pgf90).
-p4 Optimize for Pentium 4 processor (ifort_ia32,pgf90,g95,
pathscale). Adds SSE1, SSE2 vectorisation where
available.
Not required for ifort_ia64 or ifort_em64t.
-em64t configure for x86_64 (aka em64t) architecture (g95)
-cygwin Add CygWin flags for Windows (absoft,g95).
General flags:
-big Big systems support, ie, 8 byte integers and pointers.
-fpp_prefix= Define the prefix for FPP preprocessing; default is
"_".
-lmod Request linking sander with Istvan Kolossvary's LMOD
library
-mmtsb Request building sander for MMTSB.
-static Static linking, i.e., prevent linking with shared
libraries.
-verbose Add verbose compiler comment and warning flags.
Other environment variables:
AMBERHOME Root directory of the Amber tree.
MKL_HOME Root directory of the Intel Math Kernel Library
(intel,sgi_altix); for example, /opt/intel/mkl61.
The MKL helps some with performance, but it is
generally
not a big deal if you leave this variable empty.
GOTO Location for the "Goto" optimized blas library
==========================================================================
=====
Scott
Received on Wed Apr 05 2006 - 23:49:51 PDT
