PMEMD uses the excluded list, sander 6 and 7 certainly did, and I surely
don't recollect a change in 8. As someone says later, we can't just go
pulling something like this without creating havoc.
Regards - Bob
----- Original Message -----
From: "Yong Duan" <duan.ucdavis.edu>
To: <amber-developers.scripps.edu>
Sent: Thursday, November 10, 2005 7:26 PM
Subject: amber-developers: Excluded list ?
>
> Just realized that sander actually re-constitutes the excluded list from
> bond, angle, dihedral lists. Any insightful comments why it has to be
done
> this way? What will happen if I disable this (i.e., remove the code)? I
> need
> some flexibility in the excluded list but don't like to break too many
> things :(.
>
>
> yong
>
>
Received on Wed Apr 05 2006 - 23:49:50 PDT
